myRT

myRT report for GCA_900315105.1_Rumen_uncultured_genome_RUG070

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Seq: OMXX01000016.1 uncultured Prevotellaceae bacterium isolate RUG070 genome assembly, contig: scaffold_316, whole genome shotgun sequence (71727 bp)
Overview 1 RT 1: 49351-54473 bp Neighborhood of RT #1 [49351, 54481] AbiJ_NTD4 VirE_N RVT-UG28b DpnII-MboI Feature: gene Location: 49351-50214 bp Feature: domain Description: AbiJ_NTD4 Location: 49360-49846 bp Feature: domain Description: AbiJ_NTD4 Location: 49360-49846 bp Feature: gene Location: 50383-51411 bp Feature: domain Description: VirE_N Location: 50563-50935 bp Feature: domain Description: VirE_N Location: 50563-50935 bp Feature: gene Location: 51560-53311 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 51986-52721 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 51 986-52721 bp Feature: gene Location: 53542-53694 bp Feature: gene Location: 53720-54481 bp Feature: domain Description: DpnII-MboI Location: 54041-54473 bp Feature: domain Description: DpnII-MboI Location: 54041 -54473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiJ_NTD4 (pfam18863), VirE_N (pfam08800), RVT-UG28b, DpnII-MboI (pfam18742)

Seq: OMXX01000001.1 uncultured Prevotellaceae bacterium isolate RUG070 genome assembly, contig: scaffold_16, whole genome shotgun sequence (213393 bp)
Overview 1 RT 1: 119734-123292 bp Neighborhood of RT #1 [119734, 123318] RVT-UG27 DUF4120 Feature: gene Location: 119734-120210 bp Feature: gene Location: 120375-120596 bp Feature: gene Location: 120832-122091 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 121018-121666 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 12 1018-12 1666 bp Feature: gene Location: 122399-122626 bp Feature: gene Location: 122638-123318 bp Feature: domain Description: DUF4120 Location: 123088-123292 bp Feature: domain Description: DUF412 0 Location: 12 3088-12 32 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, DUF4120 (pfam13496)

Seq: OMXX01000067.1 uncultured Prevotellaceae bacterium isolate RUG070 genome assembly, contig: scaffold_2261, whole genome shotgun sequence (31881 bp)
Overview 1 RT 1: 16484-22249 bp Neighborhood of RT #1 [16484, 22249] RVT-CRISPR-like Feature: gene Location: 16484-16837 bp Feature: gene Location: 16842-17975 bp Feature: gene Location: 19016-19372 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 19223-19364 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 19223 -193 64 bp Feature: gene Location: 20842-20970 bp Feature: gene Location: 22109-22249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: OMXX01000076.1 uncultured Prevotellaceae bacterium isolate RUG070 genome assembly, contig: scaffold_2680, whole genome shotgun sequence (17602 bp)
Overview 1 RT 1: 9477-15828 bp Neighborhood of RT #1 [9477, 15863] YbjD YbjD DEXQc_UvrD DEXQc_UvrD helD RVT-Retrons Penicillinase_R Feature: gene Location: 9477-11138 bp Feature: domain Description: YbjD Location: 9480-9627 bp Feature: domain Description: YbjD Location: 94 80-9627 bp Feature: domain Description: YbjD Location: 10296-10974 bp Feature: domain Description: YbjD Location: 10296-10974 bp Feature: gene Location: 11151-12218 bp Feature: domain Description: DEXQc_UvrD Location: 11163-11301 bp Feature: domain Description: DEXQc_UvrD Location: 11163-11301 bp Feature: domain Description: DEXQc_UvrD Location: 11475-11685 bp Feature: domain Description: DEXQc_UvrD Location: 114 75-11685 bp Feature: domain Description: helD Location: 12117-12204 bp Feature: domain Description: helD Location: 12117-12204 bp Feature: gene Location: 12485-13528 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12707-13286 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12707-13286 bp Feature: gene Location: 13669-14973 bp Feature: gene Location: 15501-15863 bp Feature: domain Description: Penicillinase_R Location: 15513-15828 bp Feature: domain Description: Penicillinase_R Location: 15513-15828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), DEXQc_UvrD (cd17932), helD (PRK11054), RVT-Retrons, Penicillinase_R (pfam03965)

Seq: OMXX01000101.1 uncultured Prevotellaceae bacterium isolate RUG070 genome assembly, contig: scaffold_3808, whole genome shotgun sequence (13230 bp)
Overview 1 RT 1: 10567-12744 bp Neighborhood of RT #1 [10567, 13010] Upp RVT-Retrons Feature: gene Location: 10567-11424 bp Feature: domain Description: Upp Location: 10999-11179 bp Feature: domain Description: Upp Location: 10999-11179 bp Feature: gene Location: 11567-11737 bp Feature: gene Location: 11961-13010 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12189-12744 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12189-12744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Upp (COG0035), RVT-Retrons