myRT

myRT report for GCA_900315225.1_Rumen_uncultured_genome_RUG087

Download annotations/find similar RTs

Seq: OMYM01000418.1 (11667 bp)
Overview 1 RT 1: 318-5021 bp Neighborhood of RT #1 [318, 5680] RVT-CRISPR cas1_HMARI Cas2_I_II_III Csx1_III-U Feature: gene Location: 318-527 bp Feature: gene Location: 868-1374 bp Feature: gene Location: 1721-3640 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1922-2510 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 922-251 0 bp Feature: domain Description: cas1_HMARI Location: 2642-3605 bp Feature: domain Description: cas1 _HMARI Location: 2642-3605 bp Feature: gene Location: 3645-3971 bp Feature: domain Description: Cas2_I_II_III Location: 3654-3879 bp Feature: domain Description: Cas2_I_II_III Location: 3654-3879 bp Feature: gene Location: 3986-5680 bp Feature: domain Description: Csx1_III-U Location: 4574-5021 bp Feature: domain Description: Csx1 _III-U Location: 4574-5021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, cas1_HMARI (TIGR03641), Cas2_I_II_III (cl11442), Csx1_III-U (cl21570)

Seq: OMYM01000204.1 (8231 bp)
Overview 1 RT 1: 1-7147 bp Neighborhood of RT #1 [1, 7147] DegV RVT-GII GIIM TIR_2 KOG0266 KOG0266 WD40 WD40 WD40 KOG0266 WD40 KOG0266 Feature: gene Location: 1-153 bp Feature: domain Description: DegV Location: 7-151 bp Feature: domain Description: DegV Location: 7-151 bp Feature: gene Location: 169-363 bp Feature: gene Location: 611-1858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824-1487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 4-1487 bp Feature: domain Description: GIIM Note: maturase Location: 1565-1754 bp Feature: domain Description: GIIM Note: maturase Location: 1565-1754 bp Feature: gene Location: 2614-6546 bp Feature: domain Description: TIR_2 Location: 2632-2962 bp Feature: domain Description: TIR_2 Location: 2 632 -2 962 bp Feature: domain Description: KOG0266 Location: 4639-4867 bp Feature: domain Description: KOG02 66 Location: 4639-4867 bp Feature: domain Description: KOG0266 Location: 4897-5185 bp Feature: domain Description: KOG02 66 Location: 4897-5185 bp Feature: domain Description: WD40 Location: 5281-5377 bp Feature: domain Description: WD40 Location: 52 81-5377 bp Feature: domain Description: WD40 Location: 5413-5506 bp Feature: domain Description: WD40 Location: 5413-5506 bp Feature: domain Description: WD40 Location: 5539-5635 bp Feature: domain Description: WD40 Location: 5539-5635 bp Feature: domain Description: KOG0266 Location: 5671-6037 bp Feature: domain Description: KOG02 66 Location: 5671-6037 bp Feature: domain Description: WD40 Location: 6052-6151 bp Feature: domain Description: WD40 Location: 6052 -6151 bp Feature: domain Description: KOG0266 Location: 6181-6481 bp Feature: domain Description: KOG02 66 Location: 6181-6481 bp Feature: gene Location: 6998-7147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DegV (TIGR00762), RVT-GII, GIIM (pfam08388), TIR_2 (pfam13676), KOG0266 (KOG0266, WD40 repeat-containing protein ), WD40 (smart00320)

Seq: OMYM01000120.1 (10058 bp)
Overview 1 RT 1: 4417-7510 bp Neighborhood of RT #1 [4417, 7524] RVT-GII adjacent_YSIRK Feature: gene Location: 4417-4566 bp Feature: gene Location: 4586-4759 bp Feature: gene Location: 4851-5729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5052-5589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5052-5589 bp Feature: gene Location: 5913-6149 bp Feature: gene Location: 6337-7524 bp Feature: domain Description: adjacent_YSIRK Location: 6535-7510 bp Feature: domain Description: adjacent_YSIRK Location: 653 5-7510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, adjacent_YSIRK (TIGR04094)

Seq: OMYM01000564.1 (2035 bp)
Overview 1 RT 1: 1-1274 bp Neighborhood of RT #1 [1, 2032] ANK ANK RVT-UG28b Feature: gene Location: 1-1065 bp Feature: domain Description: ANK Location: 145-472 bp Feature: domain Description: ANK Location: 14 5-4 72 bp Feature: domain Description: ANK Location: 550-823 bp Feature: domain Description: ANK Location: 550-823 bp Feature: gene Location: 1109-2032 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 1115-1274 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 1115-1274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANK (smart00248), RVT-UG28b

Seq: OMYM01000274.1 (6692 bp)
Overview 1 RT 1: 2994-6305 bp Neighborhood of RT #1 [2994, 6305] RVT-CRISPR Cas_Cas1 Cas2_I_II_III Feature: gene Location: 2994-3200 bp Feature: gene Location: 3201-3422 bp Feature: gene Location: 3730-5646 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3934-4522 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3934-45 22 bp Feature: domain Description: Cas_Cas1 Location: 4660-5500 bp Feature: domain Description: Cas_Cas1 Location: 4660-5 5 00 bp Feature: gene Location: 5651-5932 bp Feature: domain Description: Cas2_I_II_III Location: 5660-5885 bp Feature: domain Description: Cas2_I_II_III Location: 5 660-5 885 bp Feature: gene Location: 6063-6305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442)

Seq: OMYM01000450.1 (12388 bp)
Overview 1 RT 1: 622-4593 bp Neighborhood of RT #1 [622, 4976] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Chlorophyllase2 Feature: gene Location: 622-849 bp Feature: gene Location: 935-1183 bp Feature: domain Description: Cas2_I_II_III Location: 944-1169 bp Feature: domain Description: Cas2_I_II_III Location: 944-116 9 bp Feature: gene Location: 1189-3264 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1546-2131 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1546 -2131 bp Feature: domain Description: Cas1_I-II-III Location: 2275-3223 bp Feature: domain Description: Cas1_I-II-III Location: 2275-3223 bp Feature: gene Location: 3479-3715 bp Feature: gene Location: 4032-4976 bp Feature: domain Description: Chlorophyllase2 Location: 4290-4593 bp Feature: domain Description: Chlorophyllase2 Location: 4290-4593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Chlorophyllase2 (pfam12740)

Seq: OMYM01000550.1 (4158 bp)
Overview 1 RT 1: 1-3340 bp Neighborhood of RT #1 [1, 4053] TIR_2 RVT-DGRs TIR_2 Feature: gene Location: 1-1200 bp Feature: domain Description: TIR_2 Location: 43-307 bp Feature: domain Description: TIR_2 Location: 43-307 bp Feature: gene Location: 1275-2345 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1470-2085 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 147 0-2085 bp Feature: gene Location: 2386-2709 bp Feature: gene Location: 2995-4053 bp Feature: domain Description: TIR_2 Location: 3028-3340 bp Feature: domain Description: TIR_2 Location: 3028-3340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), RVT-DGRs