myRT

myRT report for GCA_900316285.1_Rumen_uncultured_genome_RUG178

Download annotations/find similar RTs

Seq: ONCG01000018.1 (69255 bp)
Overview 1 RT 1: 6151-11256 bp Neighborhood of RT #1 [6151, 11600] PRK00024 OMP_RagA_SusC Serpin RVT-UG26 Succinoglycan_BP_ExoA Succinoglycan_BP_ExoA Feature: gene Location: 6151-6843 bp Feature: domain Description: PRK00024 Location: 6172-6838 bp Feature: domain Description: PRK00024 Location: 61 72-6838 bp Feature: gene Location: 6865-8298 bp Feature: domain Description: OMP_RagA_SusC Location: 6934-7144 bp Feature: domain Description: OMP_RagA_SusC Location: 6934-71 44 bp Feature: domain Description: Serpin Location: 7225-8290 bp Feature: domain Description: Serpin Location: 7225-8290 bp Feature: gene Location: 8480-9790 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 8780-9398 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 8780-9398 bp Feature: gene Location: 9845-10345 bp Feature: gene Location: 10407-11600 bp Feature: domain Description: Succinoglycan_BP_ExoA Location: 10416-10719 bp Feature: domain Description: Succinoglycan_BP_ExoA Location: 1 041 6-1 071 9 bp Feature: domain Description: Succinoglycan_BP_ExoA Location: 10881-11256 bp Feature: domain Description: Succinoglycan_BP_ExoA Location: 1 0881 -1 1 256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), OMP_RagA_SusC (TIGR04056), Serpin (pfam00079), RVT-UG26, Succinoglycan_BP_ExoA (cd02525)

Seq: ONCG01000011.1 (98350 bp)
Overview 1 RT 1: 77422-83636 bp Neighborhood of RT #1 [77422, 83636] Dockerin_I RVT-UG8 RVT-UG3 COG2865 Feature: gene Location: 77422-77562 bp Feature: gene Location: 77763-78098 bp Feature: domain Description: Dockerin_I Location: 77928-78093 bp Feature: domain Description: Dockerin_I Location: 7792 8-78093 bp Feature: gene Location: 78626-80542 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 79127-79571 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 7912 7-79571 bp Feature: gene Location: 80539-81729 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 80827-81292 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 8082 7-812 92 bp Feature: gene Location: 81757-83130 bp Feature: domain Description: COG2865 Location: 81763-83122 bp Feature: domain Description: COG2 865 Location: 81763-8312 2 bp Feature: gene Location: 83451-83636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dockerin_I (cd14256), RVT-UG8, RVT-UG3, COG2865 (Predicted transcriptional regulator, contains HTH domain )