myRT

myRT report for GCA_900316985.1_Rumen_uncultured_genome_RUG249

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Seq: ONFE01000148.1 (2722 bp)
Overview 1 RT 1: 2-2664 bp Neighborhood of RT #1 [2, 2720] Sigma70_r4 RVT-GII GIIM PRK05218 Feature: gene Location: 2-133 bp Feature: domain Description: Sigma70_r4 Location: 11-98 bp Feature: domain Description: Sigma70_r4 Location: 1 1 -98 bp Feature: gene Location: 577-1968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 910-1528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 0-1 528 bp Feature: domain Description: GIIM Note: maturase Location: 1588-1795 bp Feature: domain Description: GIIM Note: maturase Location: 1 588-1 795 bp Feature: gene Location: 2065-2406 bp Feature: gene Location: 2403-2720 bp Feature: domain Description: PRK05218 Location: 2409-2664 bp Feature: domain Description: PRK0521 8 Location: 2409-2664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sigma70_r4 (pfam04545), RVT-GII, GIIM (pfam08388), PRK05218 (heat shock protein 90; Provisional)

Seq: ONFE01000014.1 (73155 bp)
Overview 1 RT 1: 59359-66451 bp Neighborhood of RT #1 [59359, 66465] STAS_anti-anti-sigma_factors dCache_1 cztS_silS_copS RsbU RsbW RVT-UG26 Glyco_hydro_115 GH115_C Feature: gene Location: 59359-59667 bp Feature: domain Description: STAS_anti-anti-sigma_factors Location: 59371-59659 bp Feature: domain Description: STAS_anti-anti-sigma_factors Location: 59371-59659 bp Feature: gene Location: 59681-61996 bp Feature: domain Description: dCache_1 Location: 60098-60545 bp Feature: domain Description: dCache_1 Location: 60098-60545 bp Feature: domain Description: cztS_silS_copS Location: 60602-60794 bp Feature: domain Description: cztS_silS_copS Location: 60602 -60794 bp Feature: domain Description: RsbU Location: 60794-61586 bp Feature: domain Description: RsbU Location: 60794-61586 bp Feature: domain Description: RsbW Location: 61613-61988 bp Feature: domain Description: RsbW Location: 61613-61988 bp Feature: gene Location: 62099-63304 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 62300-62918 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 62 300-62 918 bp Feature: gene Location: 63499-64014 bp Feature: gene Location: 64189-66465 bp Feature: domain Description: Glyco_hydro_115 Location: 64615-65659 bp Feature: domain Description: Glyco_hydro_115 Location: 64615-65659 bp Feature: domain Description: GH115_C Location: 66031-66451 bp Feature: domain Description: GH115_C Location: 66031-66451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STAS_anti-anti-sigma_factors (cd07043), dCache_1 (pfam02743), cztS_silS_copS (TIGR01386), RsbU (COG2208), RsbW (COG2172), RVT-UG26, Glyco_hydro_115 (pfam15979), GH115_C (pfam17829)

Seq: ONFE01000009.1 (64524 bp)
Overview 1 RT 1: 37477-42893 bp Neighborhood of RT #1 [37477, 42893] PLDc_Nuc_like_unchar2 RVT-Retrons Feature: gene Location: 37477-38670 bp Feature: domain Description: PLDc_Nuc_like_unchar2 Location: 37486-37885 bp Feature: domain Description: PLDc_Nuc_like_unchar2 Location: 3 7486-3 7885 bp Feature: gene Location: 38717-39643 bp Feature: gene Location: 39645-41090 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39846-40458 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 9846-40458 bp Feature: gene Location: 41456-42046 bp Feature: gene Location: 42108-42893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_Nuc_like_unchar2 (cd09174), RVT-Retrons