myRT

myRT report for GCA_900318045.1_Rumen_uncultured_genome_RUG340

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Seq: ONJE01000033.1 (16641 bp)
Overview 1 RT 1: 5834-14185 bp Neighborhood of RT #1 [5834, 14247] NHLM_micro_ABC2 NHLM_micro_ABC1 RVT-UG26 Kex1 Feature: gene Location: 5834-7900 bp Feature: domain Description: NHLM_micro_ABC2 Location: 5993-7883 bp Feature: domain Description: NHLM_micro_ABC2 Location: 5993-7883 bp Feature: gene Location: 8001-10157 bp Feature: domain Description: NHLM_micro_ABC1 Location: 8007-10128 bp Feature: domain Description: NHLM_micro_ABC1 Location: 8007-1 01 28 bp Feature: gene Location: 10591-11892 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 10843-11464 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 1 0843-1 1 464 bp Feature: gene Location: 12076-12594 bp Feature: gene Location: 12727-14247 bp Feature: domain Description: Kex1 Location: 12844-14185 bp Feature: domain Description: Kex1 Location: 1 2844-1 41 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHLM_micro_ABC2 (TIGR03797), NHLM_micro_ABC1 (TIGR03796), RVT-UG26, Kex1 (COG2939)

Seq: ONJE01000220.1 (11093 bp)
Overview 1 RT 1: 4274-10687 bp Neighborhood of RT #1 [4274, 10893] LTD LTD LTD CHB_HEX_C_1 CotH COG3976 PRK07121 PRK06134 PRK07121 RVT-GII GIIM Feature: gene Location: 4274-7300 bp Feature: domain Description: LTD Location: 4475-4754 bp Feature: domain Description: LTD Location: 4475-4754 bp Feature: domain Description: LTD Location: 4880-5210 bp Feature: domain Description: LTD Location: 4880-52 10 bp Feature: domain Description: LTD Location: 5348-5660 bp Feature: domain Description: LTD Location: 5348-5660 bp Feature: domain Description: CHB_HEX_C_1 Location: 5831-5981 bp Feature: domain Description: CHB_HEX_C_1 Location: 5831-5981 bp Feature: domain Description: CotH Location: 6251-7154 bp Feature: domain Description: CotH Location: 62 51-7154 bp Feature: gene Location: 7297-8940 bp Feature: domain Description: COG3976 Location: 7366-7627 bp Feature: domain Description: COG3976 Location: 7366-762 7 bp Feature: domain Description: PRK07121 Location: 7645-8017 bp Feature: domain Description: PRK0712 1 Location: 7645-8017 bp Feature: domain Description: PRK06134 Location: 8053-8356 bp Feature: domain Description: PRK06134 Location: 8053-8356 bp Feature: domain Description: PRK07121 Location: 8692-8929 bp Feature: domain Description: PRK0712 1 Location: 8692 -892 9 bp Feature: gene Location: 9586-10893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9787-10405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9787-10405 bp Feature: domain Description: GIIM Note: maturase Location: 10462-10687 bp Feature: domain Description: GIIM Note: maturase Location: 10462 -10687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LTD (pfam00932), CHB_HEX_C_1 (pfam13290), CotH (pfam08757), COG3976 (Uncharacterized protein, contains FMN-binding domain ), PRK07121 (FAD-binding protein), PRK06134 (putative FAD-binding dehydrogenase; Reviewed), RVT-GII, GIIM (pfam08388)