myRT

myRT report for GCA_900320485.1_Rumen_uncultured_genome_RUG596

Download annotations/find similar RTs

Seq: ONSO01000009.1 (35120 bp)
Overview 1 RT 1: 14579-20408 bp Neighborhood of RT #1 [14579, 20473] Uup ABC_tran_CTD RVT-UG26 PTS-II-ABC-beta CcmA Feature: gene Location: 14579-16426 bp Feature: domain Description: Uup Location: 14582-16064 bp Feature: domain Description: Uup Location: 1 4582-1 6064 bp Feature: domain Description: ABC_tran_CTD Location: 16187-16382 bp Feature: domain Description: ABC_tran_CTD Location: 1 61 87-1 6382 bp Feature: gene Location: 16516-17079 bp Feature: gene Location: 17169-18542 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 17511-18144 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 1 751 1 -1 81 44 bp Feature: gene Location: 18539-19636 bp Feature: domain Description: PTS-II-ABC-beta Location: 18554-19610 bp Feature: domain Description: PTS-II-ABC-beta Location: 1 8554-1 961 0 bp Feature: gene Location: 19643-20473 bp Feature: domain Description: CcmA Location: 19739-20408 bp Feature: domain Description: CcmA Location: 1 9739-20408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uup (COG0488), ABC_tran_CTD (pfam16326), RVT-UG26, PTS-II-ABC-beta (TIGR01995), CcmA (COG4133)

Seq: ONSO01000112.1 (8415 bp)
Overview 1 RT 1: 3062-7920 bp Neighborhood of RT #1 [3062, 7949] DPM1_like_bac GtrA GtrA RVT-GII GIIM PBP2_TMBP_like Feature: gene Location: 3062-4060 bp Feature: domain Description: DPM1_like_bac Location: 3080-3623 bp Feature: domain Description: DPM1_like_bac Location: 3080-362 3 bp Feature: gene Location: 4053-4577 bp Feature: domain Description: GtrA Location: 4092-4383 bp Feature: domain Description: GtrA Location: 4092 -4383 bp Feature: domain Description: GtrA Location: 4470-4572 bp Feature: domain Description: GtrA Location: 4470-4572 bp Feature: gene Location: 4641-5540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4650-5082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4650-5082 bp Feature: domain Description: GIIM Note: maturase Location: 5142-5370 bp Feature: domain Description: GIIM Note: maturase Location: 5142 -5370 bp Feature: gene Location: 5673-7949 bp Feature: domain Description: PBP2_TMBP_like Location: 6822-7920 bp Feature: domain Description: PBP2 _TMBP_like Location: 682 2 -792 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DPM1_like_bac (cd04187), GtrA (pfam04138), RVT-GII, GIIM (pfam08388), PBP2_TMBP_like (cd13585)

Seq: ONSO01000007.1 (38424 bp)
Overview 1 RT 1: 33786-38423 bp Neighborhood of RT #1 [33786, 38423] HK_WalK PRK11360 CE2_N Endoglucanase_E_like RVT-GII GIIM Feature: gene Location: 33786-35258 bp Feature: domain Description: HK_WalK Location: 34263-34566 bp Feature: domain Description: HK_WalK Location: 3 4263 -3 4566 bp Feature: domain Description: PRK11360 Location: 34575-35238 bp Feature: domain Description: PRK113 60 Location: 3 4575-3 523 8 bp Feature: gene Location: 35442-36509 bp Feature: domain Description: CE2_N Location: 35478-35823 bp Feature: domain Description: CE2_N Location: 3 5478-3 5823 bp Feature: domain Description: Endoglucanase_E_like Location: 35838-36492 bp Feature: domain Description: Endoglucanase_E_like Location: 3 583 8-3 6492 bp Feature: gene Location: 36638-37921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36842-37457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6842-3 7457 bp Feature: domain Description: GIIM Note: maturase Location: 37517-37748 bp Feature: domain Description: GIIM Note: maturase Location: 3 7517-3 7748 bp Feature: gene Location: 38085-38423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HK_WalK (NF033092), PRK11360 (two-component system sensor histidine kinase AtoS), CE2_N (pfam17996), Endoglucanase_E_like (cd01831), RVT-GII, GIIM (pfam08388)