myRT

myRT report for GCA_900327215.1_FPW1038

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Seq: OOHR01000010.1 (48109 bp)
Overview 1 RT 1: 21074-24490 bp Neighborhood of RT #1 [21074, 24490] HTH_Tnp_4 DDE_Tnp_4 RVT-GII Feature: gene Location: 21074-21568 bp Feature: domain Description: HTH_Tnp_4 Location: 21215-21359 bp Feature: domain Description: HTH_Tnp_4 Location: 21 21 5-21 359 bp Feature: gene Location: 21537-21860 bp Feature: domain Description: DDE_Tnp_4 Location: 21567-21834 bp Feature: domain Description: DDE_Tnp_4 Location: 21 567-21 834 bp Feature: gene Location: 22923-23180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22932-23175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22932-231 75 bp Feature: gene Location: 23185-23418 bp Feature: gene Location: 24320-24490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359), RVT-GII

Seq: OOHR01000015.1 (51563 bp)
Overview 1 RT 1: 41039-43010 bp Neighborhood of RT #1 [41039, 43069] RVT_N RVT_N RVT-GII COG3547 COG3547 Feature: gene Location: 41039-41233 bp Feature: domain Description: RVT_N Location: 41162-41228 bp Feature: domain Description: RVT_N Location: 41162 -412 2 8 bp Feature: gene Location: 41261-41401 bp Feature: domain Description: RVT_N Location: 41264-41393 bp Feature: domain Description: RVT_N Location: 412 64-41393 bp Feature: gene Location: 41508-41948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41511-41895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41511-41895 bp Feature: gene Location: 42107-42352 bp Feature: domain Description: COG3547 Location: 42116-42320 bp Feature: domain Description: COG3547 Location: 42 116-42 32 0 bp Feature: gene Location: 42470-43069 bp Feature: domain Description: COG3547 Location: 42482-43010 bp Feature: domain Description: COG3547 Location: 42 482 -43010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, COG3547 (Transposase )

Seq: OOHR01000004.1 (94601 bp)
Overview 1 RT 1: 62848-67759 bp Neighborhood of RT #1 [62848, 67953] Toprim_3 TraA_Ti RVT_N RVT-GII GIIM HNHc TraD Feature: gene Location: 62848-63189 bp Feature: domain Description: Toprim_3 Location: 62908-63121 bp Feature: domain Description: Toprim_3 Location: 62908-63 121 bp Feature: gene Location: 63310-64662 bp Feature: domain Description: TraA_Ti Location: 63331-64432 bp Feature: domain Description: TraA_Ti Location: 63 3 3 1-6443 2 bp Feature: gene Location: 65572-66828 bp Feature: domain Description: RVT_N Location: 65629-65875 bp Feature: domain Description: RVT_N Location: 65629-65875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65923-66568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65923 -66568 bp Feature: domain Description: GIIM Note: maturase Location: 66640-66778 bp Feature: domain Description: GIIM Note: maturase Location: 66640-66778 bp Feature: gene Location: 66911-67288 bp Feature: domain Description: HNHc Note: nucleases Location: 67064-67229 bp Feature: domain Description: HNHc Note: nucleases Location: 67064-67229 bp Feature: gene Location: 67498-67953 bp Feature: domain Description: TraD Location: 67582-67759 bp Feature: domain Description: TraD Location: 67582-67759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_3 (pfam13362), TraA_Ti (TIGR02768), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), TraD (pfam06412)

Seq: OOHR01000024.1 (88354 bp)
Overview 1 RT 1: 8863-13780 bp Neighborhood of RT #1 [8863, 13800] ANK ANK RVT_N RVT-GII COG3547 Feature: gene Location: 8863-9549 bp Feature: domain Description: ANK Location: 8908-9142 bp Feature: domain Description: ANK Location: 8908-914 2 bp Feature: domain Description: ANK Location: 9274-9505 bp Feature: domain Description: ANK Location: 9274 -9505 bp Feature: gene Location: 10025-11107 bp Feature: gene Location: 11268-11888 bp Feature: domain Description: RVT_N Location: 11325-11571 bp Feature: domain Description: RVT_N Location: 11325-11571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11619-11886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11619-11886 bp Feature: gene Location: 12519-13031 bp Feature: gene Location: 13417-13800 bp Feature: domain Description: COG3547 Location: 13429-13780 bp Feature: domain Description: COG354 7 Location: 134 29-13780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ANK (smart00248), RVT_N (pfam13655), RVT-GII, COG3547 (Transposase )

Seq: OOHR01000007.1 (160208 bp)
Overview 1 RT 1: 60813-64414 bp Neighborhood of RT #1 [60813, 65112] MviN RVT-GII Lipase_3 Feature: gene Location: 60813-62327 bp Feature: domain Description: MviN Location: 60816-62304 bp Feature: domain Description: MviN Location: 60816-62304 bp Feature: gene Location: 62364-62744 bp Feature: gene Location: 62914-63153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62926-63148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62926-63148 bp Feature: gene Location: 63267-63404 bp Feature: gene Location: 63919-65112 bp Feature: domain Description: Lipase_3 Location: 64246-64414 bp Feature: domain Description: Lipase_3 Location: 64246-64414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MviN (COG0728), RVT-GII, Lipase_3 (pfam01764)

Seq: OOHR01000009.1 (62378 bp)
Overview 1 RT 1: 15116-23294 bp Neighborhood of RT #1 [15116, 23320] sucA PRK10543 RVT-GII CorB CcmF Feature: gene Location: 15116-18004 bp Feature: domain Description: sucA Location: 15137-17981 bp Feature: domain Description: sucA Location: 15137-17981 bp Feature: gene Location: 18045-18686 bp Feature: domain Description: PRK10543 Location: 18087-18669 bp Feature: domain Description: PRK10543 Location: 18087-186 6 9 bp Feature: gene Location: 18778-18948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18784-18916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18784-18916 bp Feature: gene Location: 20206-21474 bp Feature: domain Description: CorB Location: 20224-21451 bp Feature: domain Description: CorB Location: 20224-21451 bp Feature: gene Location: 21467-23320 bp Feature: domain Description: CcmF Location: 21470-23294 bp Feature: domain Description: CcmF Location: 21470-23294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sucA (PRK09404), PRK10543 (superoxide dismutase ), RVT-GII, CorB (COG4536), CcmF (COG1138)

Seq: OOHR01000012.1 (313656 bp)
Overview 1 RT 1: 53992-56966 bp Neighborhood of RT #1 [53992, 56971] COG3547 COG3547 RVT-GII TraD SpoT Feature: gene Location: 53992-54591 bp Feature: domain Description: COG3547 Location: 54004-54532 bp Feature: domain Description: COG3547 Location: 54004-54532 bp Feature: gene Location: 54709-54954 bp Feature: domain Description: COG3547 Location: 54718-54922 bp Feature: domain Description: COG3547 Location: 547 18-54922 bp Feature: gene Location: 55106-55333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55112-55322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55112-55322 bp Feature: gene Location: 55504-55638 bp Feature: domain Description: TraD Location: 55531-55594 bp Feature: domain Description: TraD Location: 55531-55594 bp Feature: gene Location: 56504-56971 bp Feature: domain Description: SpoT Location: 56534-56966 bp Feature: domain Description: SpoT Location: 56534-56966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, TraD (pfam06412), SpoT (COG0317)