myRT

myRT report for GCA_900382755.1_Vibrio_sp._strain_Evd11

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Seq: OSDX01000018.1 (84682 bp)
Overview 1 RT 1: 29264-37444 bp Neighborhood of RT #1 [29264, 37464] YejF RVT-UG1 LacI PBP1_LacI_like_9 Feature: gene Location: 29264-29758 bp Feature: gene Location: 29771-31399 bp Feature: domain Description: YejF Location: 29777-31370 bp Feature: domain Description: YejF Location: 29777-31 370 bp Feature: gene Location: 31866-35711 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 32508-33027 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 32508-33027 bp Feature: gene Location: 35780-36217 bp Feature: gene Location: 36451-37464 bp Feature: domain Description: LacI Location: 36478-36613 bp Feature: domain Description: LacI Location: 36478-3661 3 bp Feature: domain Description: PBP1_LacI_like_9 Location: 36652-37444 bp Feature: domain Description: PBP1 _LacI_like_9 Location: 36652-37444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YejF (COG4172), RVT-UG1, LacI (pfam00356), PBP1_LacI_like_9

Seq: OSDX01000004.1 (157406 bp)
Overview 1 RT 1: 150736-154558 bp Neighborhood of RT #1 [150736, 154587] RVT-GII GIIM COG3333 TctB Feature: gene Location: 150736-150897 bp Feature: gene Location: 150920-151084 bp Feature: gene Location: 151103-152449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151385-152003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151385-152 003 bp Feature: domain Description: GIIM Note: maturase Location: 152051-152255 bp Feature: domain Description: GIIM Note: maturase Location: 152 051-152 2 55 bp Feature: gene Location: 152556-154076 bp Feature: domain Description: COG3333 Location: 152559-154050 bp Feature: domain Description: COG3333 Location: 152 559-154050 bp Feature: gene Location: 154087-154587 bp Feature: domain Description: TctB Location: 154150-154558 bp Feature: domain Description: TctB Location: 154150-154558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3333 (TctA family transporter ), TctB (pfam07331)

Seq: OSDX01000085.1 (17608 bp)
Overview 1 RT 1: 10122-14016 bp Neighborhood of RT #1 [10122, 14039] RVT_N RVT-GII GIIM RadC DUF2787 Feature: gene Location: 10122-10253 bp Feature: gene Location: 10932-11075 bp Feature: gene Location: 11111-12742 bp Feature: domain Description: RVT_N Location: 11318-11561 bp Feature: domain Description: RVT_N Location: 113 18-11561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11606-12233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11606-1223 3 bp Feature: domain Description: GIIM Note: maturase Location: 12293-12518 bp Feature: domain Description: GIIM Note: maturase Location: 12293 -12518 bp Feature: gene Location: 13132-13605 bp Feature: domain Description: RadC Location: 13165-13603 bp Feature: domain Description: RadC Location: 13 165-13 603 bp Feature: gene Location: 13602-14039 bp Feature: domain Description: DUF2787 Location: 13647-14016 bp Feature: domain Description: DUF2787 Location: 13 647-14016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), RadC (pfam04002), DUF2787 (pfam10980)

Seq: OSDX01000051.1 (30532 bp)
Overview 1 RT 1: 27028-30187 bp Neighborhood of RT #1 [27028, 30411] NhaA OmpA RVT_N RVT-GII GIIM Feature: gene Location: 27028-28191 bp Feature: domain Description: NhaA Location: 27052-28147 bp Feature: domain Description: NhaA Location: 27052-2814 7 bp Feature: gene Location: 28457-28732 bp Feature: domain Description: OmpA Location: 28526-28676 bp Feature: domain Description: OmpA Location: 28526-28676 bp Feature: gene Location: 28780-30411 bp Feature: domain Description: RVT_N Location: 28987-29230 bp Feature: domain Description: RVT_N Location: 28987-29230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29275-29902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29275-29902 bp Feature: domain Description: GIIM Note: maturase Location: 29962-30187 bp Feature: domain Description: GIIM Note: maturase Location: 29962-30187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NhaA (TIGR00773), OmpA (pfam00691), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)