myRT

myRT report for GCA_900445515.1_53750_A01

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Seq: UFTH01000001.1 (5018953 bp)
Overview 1 RT 1: 620135-626866 bp 2 RT 2: 1531642-1533658 bp 3 RT 3: 3140079-3149037 bp 4 RT 4: 4413015-4416879 bp Neighborhood of RT #1 [620135, 626913] SLATT_5 COG2865 RVT-UG5 Gph LbH_MAT_GAT Neighborhood of RT #2 [1531642, 1533658] RVT-GII HTH_28 Neighborhood of RT #3 [3140079, 3149045] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #4 [4413015, 4416884] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-Retrons HTH_17 DUF3876 Feature: gene Location: 620135-620863 bp Feature: domain Description: SLATT_5 Location: 620261-620828 bp Feature: domain Description: SLATT_5 Location: 620261 -620828 bp Feature: gene Location: 621024-622403 bp Feature: domain Description: COG2865 Location: 621036-622392 bp Feature: domain Description: COG2865 Location: 621 036-622392 bp Feature: gene Location: 622408-625410 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 622936-623422 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 622936-623422 bp Feature: gene Location: 625674-626312 bp Feature: domain Description: Gph Location: 625677-626304 bp Feature: domain Description: Gph Location: 625677-626304 bp Feature: gene Location: 626290-626913 bp Feature: domain Description: LbH_MAT_GAT Location: 626329-626866 bp Feature: domain Description: LbH_MAT_GAT Location: 626329-626866 bp Feature: gene Location: 1531642-1532004 bp Feature: gene Location: 1532008-1532217 bp Feature: gene Location: 1532247-1532444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1532250-1532442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 532250-1 532442 bp Feature: gene Location: 1532565-1532855 bp Feature: domain Description: HTH_28 Location: 1532589-1532736 bp Feature: domain Description: HTH_28 Location: 1 532589-1 532736 bp Feature: gene Location: 1533284-1533658 bp Feature: gene Location: 3140079-3142268 bp Feature: domain Description: GlnA3 Location: 3140154-3142266 bp Feature: domain Description: GlnA3 Location: 31 401 54-31 42266 bp Feature: gene Location: 3142508-3144727 bp Feature: gene Location: 3144934-3146046 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3145249-3145798 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 45249-31 45798 bp Feature: gene Location: 3146188-3147981 bp Feature: domain Description: rpsA Location: 3146266-3147874 bp Feature: domain Description: rpsA Location: 31 46266-31 47874 bp Feature: gene Location: 3148131-3149045 bp Feature: domain Description: RNase_Z Location: 3148146-3149037 bp Feature: domain Description: RNase_Z Location: 31 481 46-31 49037 bp Feature: gene Location: 4413015-4413275 bp Feature: gene Location: 4413305-4414528 bp Feature: domain Description: Arm-DNA-bind_5 Location: 4413344-4413605 bp Feature: domain Description: Arm-DNA-bind_5 Location: 441 3344-441 3605 bp Feature: domain Description: Phage_int_SAM_5 Location: 4413644-4413947 bp Feature: domain Description: Phage_int_SAM_5 Location: 441 3644-441 3947 bp Feature: domain Description: INTN1_C_like Location: 4413998-4414487 bp Feature: domain Description: INTN1 _C_like Location: 441 3998-441 4487 bp Feature: gene Location: 4414537-4415385 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4414696-4415218 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 441 4696-441 521 8 bp Feature: gene Location: 4416229-4416570 bp Feature: domain Description: HTH_17 Location: 4416400-4416544 bp Feature: domain Description: HTH_1 7 Location: 441 6400-441 6544 bp Feature: gene Location: 4416582-4416884 bp Feature: domain Description: DUF3876 Location: 4416609-4416879 bp Feature: domain Description: DUF3876 Location: 441 6609-441 6879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-UG5, Gph (COG0546), LbH_MAT_GAT (cd03357), RVT-GII, HTH_28 (pfam13518), GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717)
RNase_Z (TIGR02651), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728), DUF3876 (pfam12992)