myRT

myRT report for GCA_900445585.1_43651_D01

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Seq: UAQK01000005.1 (511070 bp)
Overview 1 RT 1: 308946-312938 bp Neighborhood of RT #1 [308946, 312943] ALP RVT-GII PRK00529 Feature: gene Location: 308946-310349 bp Feature: domain Description: ALP Location: 309015-310341 bp Feature: domain Description: ALP Location: 30901 5-31 0341 bp Feature: gene Location: 310379-310639 bp Feature: gene Location: 310859-311821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 311195-311810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 1 95-31 1 81 0 bp Feature: gene Location: 311990-312262 bp Feature: gene Location: 312377-312943 bp Feature: domain Description: PRK00529 Location: 312380-312938 bp Feature: domain Description: PRK00529 Location: 31 2380-31 2938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALP (pfam17527), RVT-GII, PRK00529 (elongation factor P; Validated)

Seq: UAQK01000006.1 (5631498 bp)
Overview 1 RT 1: 1399691-1402302 bp 2 RT 2: 2028744-2034126 bp 3 RT 3: 3274673-3286056 bp 4 RT 4: 4902298-4914255 bp Neighborhood of RT #1 [1399691, 1402302] RVT-GII RVT-GII GIIM Neighborhood of RT #2 [2028744, 2034143] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3876 Neighborhood of RT #3 [3274673, 3286056] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Neighborhood of RT #4 [4902298, 4914255] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 1399691-1399819 bp Feature: gene Location: 1399888-1400133 bp Feature: gene Location: 1400423-1400911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1400759-1400897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1400759-1400897 bp Feature: gene Location: 1400923-1401603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1400941-1401334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1400941-1401334 bp Feature: domain Description: GIIM Note: maturase Location: 1401349-1401580 bp Feature: domain Description: GIIM Note: maturase Location: 1401349-1401580 bp Feature: gene Location: 1401703-1401960 bp Feature: gene Location: 1402096-1402302 bp Feature: gene Location: 2028744-2031143 bp Feature: domain Description: Bac_Flav_CT_G Location: 2028747-2031132 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 02 8747-2 031132 bp Feature: gene Location: 2031277-2031453 bp Feature: gene Location: 2031711-2033534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2031975-2032797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 031975-2 032 797 bp Feature: domain Description: Intron_maturas2 Location: 2032977-2033214 bp Feature: domain Description: Intron_maturas2 Location: 2 032 977-2 0332 14 bp Feature: domain Description: HNHc Note: nucleases Location: 2033325-2033496 bp Feature: domain Description: HNHc Note: nucleases Location: 2 03332 5-2 033496 bp Feature: gene Location: 2033638-2033775 bp Feature: domain Description: Bac_Flav_CT_G Location: 2033644-2033740 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 033644-2 033740 bp Feature: gene Location: 2033772-2034143 bp Feature: domain Description: DUF3876 Location: 2033853-2034126 bp Feature: domain Description: DUF3876 Location: 2 033853-2 03412 6 bp Feature: gene Location: 3274673-3275818 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3274697-3274943 bp Feature: domain Description: Arm-DNA-bind_5 Location: 32 74697-32 74943 bp Feature: domain Description: Phage_int_SAM_5 Location: 3274982-3275267 bp Feature: domain Description: Phage_int_SAM_5 Location: 32 74982 -32 752 67 bp Feature: domain Description: INTN1_C_like Location: 3275306-3275780 bp Feature: domain Description: INTN1_C_like Location: 32 75306-32 75780 bp Feature: gene Location: 3275868-3276362 bp Feature: gene Location: 3276364-3277719 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3276640-3277231 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 32 76640-32 772 31 bp Feature: gene Location: 3278092-3284880 bp Feature: domain Description: Laminin_G_3 Location: 3280528-3280909 bp Feature: domain Description: Laminin_G_3 Location: 32 8052 8-32 80909 bp Feature: domain Description: pfam08757 Location: 3281704-3282028 bp Feature: domain Description: pfam08757 Location: 32 81704-32 82 02 8 bp Feature: domain Description: LRR_AMN1 Location: 3282640-3283084 bp Feature: domain Description: LRR_AMN1 Location: 32 82 640-32 83084 bp Feature: gene Location: 3284890-3286056 bp Feature: gene Location: 4902298-4904097 bp Feature: domain Description: rpsA Location: 4902367-4903981 bp Feature: domain Description: rpsA Location: 4902 367-4903981 bp Feature: gene Location: 4904266-4910094 bp Feature: domain Description: DUF4011 Location: 4905421-4905934 bp Feature: domain Description: DUF4011 Location: 490542 1-4905934 bp Feature: domain Description: DEXXQc_SF1 Location: 4906273-4906873 bp Feature: domain Description: DEXXQc_SF1 Location: 49062 73-4906873 bp Feature: domain Description: DEXXQc_SF1 Location: 4907710-4908460 bp Feature: domain Description: DEXXQc_SF1 Location: 4907710-4908460 bp Feature: domain Description: SF1_C_Upf1 Location: 4908469-4908982 bp Feature: domain Description: SF1_C_Upf1 Location: 4908469-4908982 bp Feature: domain Description: MTES_1575 Location: 4909132-4909420 bp Feature: domain Description: MTES_1575 Location: 4909132 -490942 0 bp Feature: domain Description: DUF3320 Location: 4909600-4909744 bp Feature: domain Description: DUF332 0 Location: 4909600-4909744 bp Feature: gene Location: 4910128-4911261 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4910452-4911004 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4910452 -4911004 bp Feature: gene Location: 4911467-4913653 bp Feature: gene Location: 4914055-4914255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs
Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons