myRT

myRT report for GCA_900447015.1_57530_A01

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Seq: UAVW01000021.1 [Clostridium] clostridioforme strain NCTC11224 genome assembly, contig: ERS1554598SCcontig000021, whole genome shotgun sequence (227214 bp) Associated domains: IS285 (COG3328), RVT-GII, GIIM (pfam08388), DUF2325 (pfam10087)

Seq: UAVW01000020.1 [Clostridium] clostridioforme strain NCTC11224 genome assembly, contig: ERS1554598SCcontig000020, whole genome shotgun sequence (255242 bp) Associated domains: RVT-GII, GIIM (pfam08388), PBP2_LTTR_substrate (cd05466), 53EXOc (smart00475), CdAMP_rec (pfam06153), CO_DH_cata (TIGR01702), FeFe_hydrog_A (TIGR02512), Fe_hyd_SSU (smart00902), Cytidylate_kin2 (pfam13189), PRK00331 (isomerizing glutamine--fructose-6-phosphate transaminase)

Seq: UAVW01000019.1 [Clostridium] clostridioforme strain NCTC11224 genome assembly, contig: ERS1554598SCcontig000019, whole genome shotgun sequence (451268 bp) Associated domains: AraC_binding (pfam02311), YesN (COG4753), RVT-GII, GIIM (pfam08388), GlxI_Zn (cd07233), PRK05431 (seryl-tRNA synthetase; Provisional), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), MmcQ (COG2315), Cfa (COG2230)
pyruv_ox_red (TIGR02176), dCache_1 (pfam02743), GGDEF (TIGR00254), PRK05377 (fructose-1,6-bisphosphate aldolase; Reviewed), MgtE (pfam01769), Intron_maturas2 (pfam01348), HNHc (smart00507), COG3547 (Transposase ), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007)
zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), UgpE (COG0395)

Seq: UAVW01000018.1 [Clostridium] clostridioforme strain NCTC11224 genome assembly, contig: ERS1554598SCcontig000018, whole genome shotgun sequence (335244 bp) Associated domains: Na_H_Exchanger (pfam00999), Acetyltransf_7 (pfam13508), RVT-GII, GIIM (pfam08388), PRK13034 (serine hydroxymethyltransferase; Reviewed), GDC-P (pfam02347), DDE_Tnp_1 (pfam01609), PRK07116 (flavodoxin; Provisional), IS285 (COG3328), COG2405 (Predicted nucleic acid-binding protein, contains PIN domain )
HTH_38 (pfam13936)

Seq: UAVW01000017.1 [Clostridium] clostridioforme strain NCTC11224 genome assembly, contig: ERS1554598SCcontig000017, whole genome shotgun sequence (316761 bp) Associated domains: CdsB (COG3681), FeFe_hydrog_B1 (TIGR04105), RVT-GII, GIIM (pfam08388), DUF4143 (pfam13635), myo_inos_iolC_N (TIGR04382), SGNH_arylesterase_like (cd01839)

Seq: UAVW01000016.1 [Clostridium] clostridioforme strain NCTC11224 genome assembly, contig: ERS1554598SCcontig000016, whole genome shotgun sequence (468658 bp) Associated domains: RVT-DGRs, Avd_like (cd16376), nirV (LOAD_nirV), LivM (COG4177), LivH (COG0559), RVT-GII, GIIM (pfam08388), PBP1_ABC_ligand_binding_like_12, gpsA (PRK00094), LysR (COG0583)
DinG (COG1199), rad3 (TIGR00604), PTS-HPr_like (cl00206)

Seq: UAVW01000015.1 [Clostridium] clostridioforme strain NCTC11224 genome assembly, contig: ERS1554598SCcontig000015, whole genome shotgun sequence (601101 bp) Associated domains: PRK05590 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388), Methyltransf_25 (pfam13649), hslO (PRK01402), PRK14717 (putative glycine/sarcosine/betaine reductase complex protein A; Provisional), PrdX_deacylase (cd04335), TIGR00004 (reactive intermediate/imine deaminase), TTRAP (pfam14203), Methyltransf_11 (pfam08241)
GntR (pfam00392), PRK09706 (transcriptional repressor DicA; Reviewed), RVT-DGRs, URO-D_like (cd03465), UgpB (COG1653), XdhC (COG1975), TIGR03172 (probable selenium-dependent hydroxylase accessory protein YqeC), GT_2_like_f (cd04182), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: UAVW01000001.1 [Clostridium] clostridioforme strain NCTC11224 genome assembly, contig: ERS1554598SCcontig000001, whole genome shotgun sequence (1263735 bp) Associated domains: rpoN_sigma (TIGR02395), RVT-GII, GIIM (pfam08388), AraD (COG0235), PRK01202 (glycine cleavage system protein GcvH), gcvT (TIGR00528), DUF3881 (pfam12997), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), COG1373 (Predicted ATPase, AAA+ superfamily )
RAYT (COG1943), HTH_17 (pfam12728), GntR (pfam00392), COG5505 (Uncharacterized membrane protein ), PRK09414 (NADP-specific glutamate dehydrogenase), BglG (COG3711), PTS_EIIA_2 (pfam00359), group_II_RT_mat (TIGR04416), PRK12267 (methionyl-tRNA synthetase; Reviewed), GT4_PimA-like (cd03801)
TraX (pfam05857), UgpE (COG0395), AgaS (COG2222), PRK00373 (V-type ATP synthase subunit D; Reviewed), TlpA_like_family (cd02966), DEDD_Tnp_IS110 (pfam01548), Intron_maturas2 (pfam01348), HNHc (smart00507), Transposase_20 (pfam02371), COG5263 (Glucan-binding domain (YG repeat) )
PRK14869 (putative manganese-dependent inorganic diphosphatase), RutF (TIGR03615), MR_like (cd03316), AcrR (COG1309), Sfp (COG2091), NADPH_oxidoreductase_1, FmnP (COG3601), Spr (COG0791), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986)

Seq: UAVW01000002.1 [Clostridium] clostridioforme strain NCTC11224 genome assembly, contig: ERS1554598SCcontig000002, whole genome shotgun sequence (206820 bp) Associated domains: group_II_RT_mat (TIGR04416), excise (TIGR01764), RVT-GII, GIIM (pfam08388), selenium_YedF (TIGR03527), DUF2500 (pfam10694), HTH_Crp_2 (pfam13545), COG1768 (Predicted phosphohydrolase ), glgD (TIGR02092)

Seq: UAVW01000003.1 [Clostridium] clostridioforme strain NCTC11224 genome assembly, contig: ERS1554598SCcontig000003, whole genome shotgun sequence (246045 bp) Associated domains: RVT-GII, Intron_maturas2 (pfam01348), ZipA (COG3115), PulO (COG1989), HNHc (smart00507)

Seq: UAVW01000006.1 [Clostridium] clostridioforme strain NCTC11224 genome assembly, contig: ERS1554598SCcontig000006, whole genome shotgun sequence (99155 bp) Associated domains: group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), YejR (COG0523), CobW-like (cd03112), TIGR03943 (TIGR03943 family protein), PRK06078 (pyrimidine-nucleoside phosphorylase; Reviewed), SpoIID (pfam08486), 3D_containing_proteins (cd14667), LPG_synthase_TM (pfam03706)
UxaC (pfam02614)

Seq: UAVW01000004.1 [Clostridium] clostridioforme strain NCTC11224 genome assembly, contig: ERS1554598SCcontig000004, whole genome shotgun sequence (160727 bp) Associated domains: DDE_5 (pfam13546), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT-GII, Intron_maturas2 (pfam01348), PinE (COG1961), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), GIIM (pfam08388)

Seq: UAVW01000009.1 [Clostridium] clostridioforme strain NCTC11224 genome assembly, contig: ERS1554598SCcontig000009, whole genome shotgun sequence (955997 bp) Associated domains: RVT-GII, GIIM (pfam08388), PRK13782 (HPr family phosphocarrier protein), Zn_Tnp_IS91 (pfam14319), Y2_Tnp (pfam04986), PRK13549 (xylose transporter ATP-binding subunit; Provisional), PBP1_ABC_xylose_binding (cd19991), PRK11618 (inner membrane ABC transporter permease protein YjfF; Provisional), HTH_23 (pfam13384), DDE_3 (pfam13358)
PRK10658 (putative alpha-glucosidase; Provisional), PurR (COG1609), PBP2_TMBP_like (cd13585), FadR (COG2186), RVT-Retrons, SAP (smart00513), 2A0121 (TIGR00900), COG3943 (Uncharacterized conserved protein ), DUF4062 (pfam13271), mutarot_permut (TIGR03548)
DUF1836 (pfam08876), yecD_yerC (TIGR02531), HTH_29 (pfam13551), HTH_32 (pfam13565), GrpB (pfam04229), Acetyltransf_1 (pfam00583), AhpF_homolog (TIGR03143), AhpC (TIGR03137), PTS_EIIC_2 (pfam13303)