myRT

myRT report for GCA_900447025.1_52121_F02

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Seq: UARH01000013.1 (299849 bp)
Overview 1 RT 1: 192724-196814 bp 2 RT 2: 227993-232608 bp Neighborhood of RT #1 [192724, 196822] RVT-GII HNHc DUF2922 Bro-N ANT Neighborhood of RT #2 [227993, 232682] RVT-GII HNHc DUF2922 MATE_MepA_like Feature: gene Location: 192724-192906 bp Feature: gene Location: 193185-193313 bp Feature: gene Location: 193600-195414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193918-194617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9391 8-1 9461 7 bp Feature: domain Description: HNHc Note: nucleases Location: 195169-195304 bp Feature: domain Description: HNHc Note: nucleases Location: 1 951 69-1 95304 bp Feature: gene Location: 195770-195988 bp Feature: domain Description: DUF2922 Location: 195785-195977 bp Feature: domain Description: DUF2922 Location: 1 95785-1 95977 bp Feature: gene Location: 196067-196822 bp Feature: domain Description: Bro-N Location: 196109-196391 bp Feature: domain Description: Bro-N Location: 1 961 09-1 96391 bp Feature: domain Description: ANT Location: 196505-196814 bp Feature: domain Description: ANT Location: 1 96505-1 9681 4 bp Feature: gene Location: 227993-228175 bp Feature: gene Location: 228454-228582 bp Feature: gene Location: 228869-230683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229187-229886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2291 87-229886 bp Feature: domain Description: HNHc Note: nucleases Location: 230438-230573 bp Feature: domain Description: HNHc Note: nucleases Location: 230438-230573 bp Feature: gene Location: 230959-231177 bp Feature: domain Description: DUF2922 Location: 230974-231166 bp Feature: domain Description: DUF2922 Location: 230974-231 1 66 bp Feature: gene Location: 231294-232682 bp Feature: domain Description: MATE_MepA_like Location: 231327-232608 bp Feature: domain Description: MATE_MepA_like Location: 231 327-232608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), DUF2922 (pfam11148), Bro-N (smart01040), ANT (pfam03374), MATE_MepA_like (cd13143)

Seq: UARH01000001.1 (2068104 bp)
Overview 1 RT 1: 1237354-1244658 bp 2 RT 2: 1486086-1490975 bp 3 RT 3: 1493846-1503071 bp 4 RT 4: 1765208-1770701 bp Neighborhood of RT #1 [1237354, 1244666] BaeS PhoE RVT-GII PBP1_GGBP Neighborhood of RT #2 [1486086, 1490989] DUF2922 RVT-GII HNHc PRK06811 Neighborhood of RT #3 [1493846, 1503091] PTPLP-like GxGYxYP_N GxGYxYP_C sCache_3_2 Tar RVT-GII OmpR CcmA Neighborhood of RT #4 [1765208, 1770805] FieF DUF3850 RVT-GII Acetyltransf_7 spoT_relA Feature: gene Location: 1237354-1238619 bp Feature: domain Description: BaeS Location: 1238179-1238611 bp Feature: domain Description: BaeS Location: 12 38179-12 38611 bp Feature: gene Location: 1239050-1239844 bp Feature: domain Description: PhoE Location: 1239155-1239821 bp Feature: domain Description: PhoE Location: 12 39155-12 3982 1 bp Feature: gene Location: 1240485-1241399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1240740-1241364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 40740-12 41364 bp Feature: gene Location: 1242766-1243341 bp Feature: gene Location: 1243614-1244666 bp Feature: domain Description: PBP1_GGBP Location: 1243728-1244658 bp Feature: domain Description: PBP1_GGBP Location: 12 4372 8-12 44658 bp Feature: gene Location: 1486086-1486412 bp Feature: gene Location: 1486749-1486967 bp Feature: domain Description: DUF2922 Location: 1486764-1486956 bp Feature: domain Description: DUF2 92 2 Location: 1486764-1486956 bp Feature: gene Location: 1487317-1489131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1487635-1488334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1487635-1488334 bp Feature: domain Description: HNHc Note: nucleases Location: 1488886-1489021 bp Feature: domain Description: HNHc Note: nucleases Location: 1488886-148902 1 bp Feature: gene Location: 1489418-1489546 bp Feature: gene Location: 1490444-1490989 bp Feature: domain Description: PRK06811 Location: 1490447-1490975 bp Feature: domain Description: PRK06811 Location: 1490447-1490975 bp Feature: gene Location: 1493846-1496311 bp Feature: domain Description: PTPLP-like Location: 1493972-1494746 bp Feature: domain Description: PTPLP-like Location: 1493972 -1494746 bp Feature: domain Description: GxGYxYP_N Location: 1494896-1495526 bp Feature: domain Description: GxGYxYP_N Location: 1494896-149552 6 bp Feature: domain Description: GxGYxYP_C Location: 1495583-1496291 bp Feature: domain Description: GxGYxYP_C Location: 1495583-14962 91 bp Feature: gene Location: 1496609-1498606 bp Feature: domain Description: sCache_3_2 Location: 1496780-1497146 bp Feature: domain Description: sCache_3_2 Location: 1496780-1497146 bp Feature: domain Description: Tar Location: 1497368-1498604 bp Feature: domain Description: Tar Location: 1497368-1498604 bp Feature: gene Location: 1499200-1500114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1499455-1500079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1499455-1500079 bp Feature: gene Location: 1501329-1502024 bp Feature: domain Description: OmpR Location: 1501356-1502019 bp Feature: domain Description: OmpR Location: 1501356-1502 019 bp Feature: gene Location: 1502171-1503091 bp Feature: domain Description: CcmA Location: 1502174-1503071 bp Feature: domain Description: CcmA Location: 1502 174-1503071 bp Feature: gene Location: 1765208-1766098 bp Feature: domain Description: FieF Location: 1765211-1766087 bp Feature: domain Description: FieF Location: 17652 11-1766087 bp Feature: gene Location: 1766763-1767260 bp Feature: domain Description: DUF3850 Location: 1766769-1766994 bp Feature: domain Description: DUF3850 Location: 1766769-1766994 bp Feature: gene Location: 1768118-1769032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1768373-1768997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1768373-1768997 bp Feature: gene Location: 1769704-1770189 bp Feature: domain Description: Acetyltransf_7 Location: 1769869-1770118 bp Feature: domain Description: Acetyltransf_7 Location: 1769869-1770118 bp Feature: gene Location: 1770374-1770805 bp Feature: domain Description: spoT_relA Location: 1770389-1770701 bp Feature: domain Description: spoT_relA Location: 1770389-1770701 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), PhoE (COG0406), RVT-GII, PBP1_GGBP (cd01539), DUF2922 (pfam11148), HNHc (smart00507), PRK06811 (RNA polymerase factor sigma-70; Validated), PTPLP-like (cd14495), GxGYxYP_N (pfam16216), GxGYxYP_C (pfam14323)
sCache_3_2 (pfam17203), Tar (COG0840), OmpR (COG0745), CcmA (COG4133), FieF (COG0053), DUF3850 (pfam12961), Acetyltransf_7 (pfam13508), spoT_relA (TIGR00691)

Seq: UARH01000016.1 (315297 bp)
Overview 1 RT 1: 128360-137834 bp Neighborhood of RT #1 [128360, 137842] Beta4Glucosyltransferase TPR_1 TPR Collagen Collagen KOG3544 KOG3544 Collagen RVT-GII GT2 Methyltransf_23 RfaB Feature: gene Location: 128360-129412 bp Feature: domain Description: Beta4Glucosyltransferase Location: 128363-129008 bp Feature: domain Description: Beta4Glucosyltransferase Location: 1283 63 -129008 bp Feature: domain Description: TPR_1 Location: 129125-129215 bp Feature: domain Description: TPR_1 Location: 129125-129215 bp Feature: domain Description: TPR Location: 129272-129383 bp Feature: domain Description: TPR Location: 129272-1293 83 bp Feature: gene Location: 129678-132590 bp Feature: domain Description: Collagen Location: 130218-130374 bp Feature: domain Description: Collagen Location: 13 0218-13 03 74 bp Feature: domain Description: Collagen Location: 130494-130614 bp Feature: domain Description: Collagen Location: 13 0494-13 0614 bp Feature: domain Description: KOG3544 Location: 130878-131268 bp Feature: domain Description: KOG3 544 Location: 13 0878-13 1268 bp Feature: domain Description: KOG3544 Location: 131592-132000 bp Feature: domain Description: KOG3 544 Location: 13 1592-13 2000 bp Feature: domain Description: Collagen Location: 132024-132198 bp Feature: domain Description: Collagen Location: 13 2024-13 2198 bp Feature: gene Location: 133750-134664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134005-134629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 4005-13 4629 bp Feature: gene Location: 135221-136633 bp Feature: domain Description: GT2 Location: 135233-135899 bp Feature: domain Description: GT2 Location: 13 523 3 -13 5899 bp Feature: domain Description: Methyltransf_23 Location: 135986-136469 bp Feature: domain Description: Methyltransf_23 Location: 13 5986-13 6469 bp Feature: gene Location: 136784-137842 bp Feature: domain Description: RfaB Location: 137102-137834 bp Feature: domain Description: RfaB Location: 13 7102-13 783 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Beta4Glucosyltransferase (cd02511), TPR_1 (pfam00515), TPR (smart00028), Collagen (pfam01391), KOG3544 (KOG3544, Collagens (type IV and type XIII), and related proteins ), RVT-GII, GT2 (COG1216), Methyltransf_23 (pfam13489), RfaB (COG0438)

Seq: UARH01000014.1 (232861 bp)
Overview 1 RT 1: 144263-151779 bp Neighborhood of RT #1 [144263, 151784] BaeS OmpR RVT-GII GIIM HTH_MARR UvrA UvrA Feature: gene Location: 144263-145315 bp Feature: domain Description: BaeS Location: 144401-145307 bp Feature: domain Description: BaeS Location: 14 4 4 01-14 5307 bp Feature: gene Location: 145320-146012 bp Feature: domain Description: OmpR Location: 145329-146004 bp Feature: domain Description: OmpR Location: 14 5329-14 6004 bp Feature: gene Location: 146814-148229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147171-147789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 7171-14 7789 bp Feature: domain Description: GIIM Note: maturase Location: 147840-148068 bp Feature: domain Description: GIIM Note: maturase Location: 14 784 0-14 8068 bp Feature: gene Location: 149096-149533 bp Feature: domain Description: HTH_MARR Location: 149183-149474 bp Feature: domain Description: HTH_MARR Location: 14 9183-14 94 74 bp Feature: gene Location: 149535-151784 bp Feature: domain Description: UvrA Location: 149541-149901 bp Feature: domain Description: UvrA Location: 14 954 1-14 9901 bp Feature: domain Description: UvrA Location: 149916-151779 bp Feature: domain Description: UvrA Location: 14 9916-151779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), OmpR (COG0745), RVT-GII, GIIM (pfam08388), HTH_MARR (smart00347), UvrA (COG0178)

Seq: UARH01000002.1 (194839 bp)
Overview 1 RT 1: 16776-22174 bp 2 RT 2: 66274-79299 bp Neighborhood of RT #1 [16776, 22203] PRK06696 COG4997 RVT-GII GIIM TetR_N TetR_C_33 MFS_MdtG_MDR_like Neighborhood of RT #2 [66274, 79299] RMtype1_S_LdeBORF1052P-TRD2-CR2 RMtype1_S_LdeBORF1052P-TRD2-CR2 COG0610 RVT-UG5 Feature: gene Location: 16776-17384 bp Feature: domain Description: PRK06696 Location: 16827-17376 bp Feature: domain Description: PRK06696 Location: 16827-17376 bp Feature: gene Location: 17469-17777 bp Feature: domain Description: COG4997 Location: 17472-17748 bp Feature: domain Description: COG4997 Location: 17472-17748 bp Feature: gene Location: 18360-19775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18717-19335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18717-19335 bp Feature: domain Description: GIIM Note: maturase Location: 19386-19614 bp Feature: domain Description: GIIM Note: maturase Location: 19386-19614 bp Feature: gene Location: 20027-20584 bp Feature: domain Description: TetR_N Location: 20081-20192 bp Feature: domain Description: TetR_N Location: 20081-20192 bp Feature: domain Description: TetR_C_33 Location: 20276-20564 bp Feature: domain Description: TetR_C_33 Location: 20276-205 64 bp Feature: gene Location: 21004-22203 bp Feature: domain Description: MFS_MdtG_MDR_like Location: 21043-22174 bp Feature: domain Description: MFS_MdtG_MDR_like Location: 21043-22174 bp Feature: gene Location: 66274-67476 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 66406-66859 bp Feature: domain Description: RMtype1_S_LdeBORF105 2P-TRD2-CR2 Location: 66406-6685 9 bp Feature: domain Description: RMtype1_S_LdeBORF1052P-TRD2-CR2 Location: 66916-67471 bp Feature: domain Description: RMtype1_S_LdeBORF105 2P-TRD2-CR2 Location: 66916-67471 bp Feature: gene Location: 67568-70654 bp Feature: domain Description: COG0610 Location: 67595-70010 bp Feature: domain Description: COG0610 Location: 675 95 -70010 bp Feature: gene Location: 71981-75715 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 72440-72887 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 72440-72887 bp Feature: gene Location: 75734-76666 bp Feature: gene Location: 76816-79299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06696 (uridine kinase; Validated), COG4997 (Predicted house-cleaning noncanonical NTP pyrophosphatase, all-alpha NTP-PPase (MazG) superfamily ), RVT-GII, GIIM (pfam08388), TetR_N (pfam00440), TetR_C_33, MFS_MdtG_MDR_like (cd17391), RMtype1_S_LdeBORF1052P-TRD2-CR2 (cd17278), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG5

Seq: UARH01000011.1 (1397720 bp)
Overview 1 RT 1: 74373-77926 bp Neighborhood of RT #1 [74373, 77926] RVT-UG2 COG4185 Feature: gene Location: 74373-74624 bp Feature: gene Location: 74820-74978 bp Feature: gene Location: 75383-76696 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 75575-76397 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 75575-76 397 bp Feature: gene Location: 77187-77753 bp Feature: domain Description: COG4185 Location: 77190-77745 bp Feature: domain Description: COG4185 Location: 77190-77745 bp Feature: gene Location: 77753-77926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, COG4185 (Predicted ABC-type ATPase )