myRT

myRT report for GCA_900447655.1_51485_G01

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Seq: UGIH01000002.1 (1685418 bp)
Overview 1 RT 1: 180358-187683 bp 2 RT 2: 1095177-1099811 bp 3 RT 3: 1516192-1522879 bp Neighborhood of RT #1 [180358, 187793] DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM RVT-GII GIIM RVT-GII YorC VOC_like Neighborhood of RT #2 [1095177, 1099834] DUF961 FtsK RVT-GII InsE PHA02517 Neighborhood of RT #3 [1516192, 1522902] Pentapeptide_4 Pentapeptide_4 Hydrolase_4 Hydrolase_4 RVT-GII RVT-GII GIIM RVT-GII GIIM FtsW Feature: gene Location: 180358-181608 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 180373-180847 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 80373-1 80847 bp Feature: domain Description: Transposase_20 Location: 181213-181471 bp Feature: domain Description: Transposase_20 Location: 1 81 21 3-1 81 471 bp Feature: gene Location: 181883-182740 bp Feature: gene Location: 182807-183361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 182819-182909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8281 9-1 82909 bp Feature: domain Description: GIIM Note: maturase Location: 182966-183182 bp Feature: domain Description: GIIM Note: maturase Location: 1 82966-1 831 82 bp Feature: gene Location: 183480-184724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183684-184341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 83684-1 84341 bp Feature: domain Description: GIIM Note: maturase Location: 184422-184638 bp Feature: domain Description: GIIM Note: maturase Location: 1 84422-1 84638 bp Feature: gene Location: 185256-186059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 185577-186051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 85577-1 86051 bp Feature: gene Location: 186546-187076 bp Feature: domain Description: YorC Location: 186558-187062 bp Feature: domain Description: YorC Location: 1 86558-1 87062 bp Feature: gene Location: 187320-187793 bp Feature: domain Description: VOC_like Location: 187323-187683 bp Feature: domain Description: VOC_like Location: 1 87323-1 87683 bp Feature: gene Location: 1095177-1095587 bp Feature: domain Description: DUF961 Location: 1095234-1095513 bp Feature: domain Description: DUF961 Location: 1 095234-1 09551 3 bp Feature: gene Location: 1095637-1096854 bp Feature: domain Description: FtsK Location: 1096282-1096780 bp Feature: domain Description: FtsK Location: 1 096282-1 096780 bp Feature: gene Location: 1097430-1098638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1097694-1098516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 097694-1 09851 6 bp Feature: gene Location: 1098738-1098962 bp Feature: domain Description: InsE Location: 1098759-1098954 bp Feature: domain Description: InsE Location: 1 098759-1 098954 bp Feature: gene Location: 1099013-1099834 bp Feature: domain Description: PHA02517 Location: 1099031-1099811 bp Feature: domain Description: PHA0251 7 Location: 1 099031 -1 09981 1 bp Feature: gene Location: 1516192-1516827 bp Feature: domain Description: Pentapeptide_4 Location: 1516330-1516450 bp Feature: domain Description: Pentapeptide_4 Location: 1 51 6330-1 51 6450 bp Feature: domain Description: Pentapeptide_4 Location: 1516450-1516705 bp Feature: domain Description: Pentapeptide_4 Location: 1 51 6450-1 51 6705 bp Feature: gene Location: 1516828-1517523 bp Feature: domain Description: Hydrolase_4 Location: 1516888-1517242 bp Feature: domain Description: Hydrolase_4 Location: 1 51 6888-1 51 7242 bp Feature: domain Description: Hydrolase_4 Location: 1517320-1517476 bp Feature: domain Description: Hydrolase_4 Location: 1 51 7320-1 51 7476 bp Feature: gene Location: 1518003-1518806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1518324-1518798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 8324-1 51 8798 bp Feature: gene Location: 1518931-1519062 bp Feature: gene Location: 1519338-1520582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1519542-1520199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 9542-1 5201 99 bp Feature: domain Description: GIIM Note: maturase Location: 1520280-1520496 bp Feature: domain Description: GIIM Note: maturase Location: 1 520280-1 520496 bp Feature: gene Location: 1520701-1521255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1520713-1520803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 52071 3-1 520803 bp Feature: domain Description: GIIM Note: maturase Location: 1520860-1521076 bp Feature: domain Description: GIIM Note: maturase Location: 1 520860-1 521 076 bp Feature: gene Location: 1521432-1521728 bp Feature: gene Location: 1521754-1522902 bp Feature: domain Description: FtsW Location: 1521763-1522879 bp Feature: domain Description: FtsW Location: 1 521 763-1 522879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT-GII, GIIM (pfam08388), YorC (COG4502), VOC_like (cd16355), DUF961 (pfam06125), FtsK (COG1674), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)
Pentapeptide_4 (pfam13599), Hydrolase_4 (pfam12146), FtsW (COG0772)

Seq: UGIH01000004.1 (420906 bp)
Overview 1 RT 1: 127532-134198 bp 2 RT 2: 289760-299676 bp Neighborhood of RT #1 [127532, 134476] PRK00942 argD RVT-GII RVT-GII GIIM RVT-GII GIIM DUF2922 Neighborhood of RT #2 [289760, 299681] chaperone_ClpB AL_MDR RVT-GII GIIM RVT-GII GIIM RVT-GII LPG_synthase_TM peptidase-T Feature: gene Location: 127532-128281 bp Feature: domain Description: PRK00942 Location: 127541-128234 bp Feature: domain Description: PRK00942 Location: 12 7541-12 82 34 bp Feature: gene Location: 128278-129420 bp Feature: domain Description: argD Location: 128281-129412 bp Feature: domain Description: argD Location: 12 82 81-12 9412 bp Feature: gene Location: 129922-130725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130243-130717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1302 43-130717 bp Feature: gene Location: 130850-130981 bp Feature: gene Location: 131257-132501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131461-132118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131461-132 118 bp Feature: domain Description: GIIM Note: maturase Location: 132199-132415 bp Feature: domain Description: GIIM Note: maturase Location: 132 199-132 415 bp Feature: gene Location: 132620-133174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132632-132722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 632 -132 72 2 bp Feature: domain Description: GIIM Note: maturase Location: 132779-132995 bp Feature: domain Description: GIIM Note: maturase Location: 132 779-132 995 bp Feature: gene Location: 133549-133938 bp Feature: gene Location: 133970-134476 bp Feature: domain Description: DUF2922 Location: 134000-134198 bp Feature: domain Description: DUF2 92 2 Location: 134000-134198 bp Feature: gene Location: 289760-292363 bp Feature: domain Description: chaperone_ClpB Location: 289778-292334 bp Feature: domain Description: chaperone_ClpB Location: 2 89778-2 92 334 bp Feature: gene Location: 292521-293531 bp Feature: domain Description: AL_MDR Location: 292533-293523 bp Feature: domain Description: AL_MDR Location: 2 92 533-2 9352 3 bp Feature: gene Location: 293607-294161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293619-293709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 93619-2 93709 bp Feature: domain Description: GIIM Note: maturase Location: 293766-293982 bp Feature: domain Description: GIIM Note: maturase Location: 2 93766-2 93982 bp Feature: gene Location: 294280-295524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294484-295141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 94484-2 95141 bp Feature: domain Description: GIIM Note: maturase Location: 295222-295438 bp Feature: domain Description: GIIM Note: maturase Location: 2 952 2 2 -2 95438 bp Feature: gene Location: 296056-296859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296377-296851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 96377-2 96851 bp Feature: gene Location: 297315-298349 bp Feature: domain Description: LPG_synthase_TM Location: 297354-298272 bp Feature: domain Description: LPG_synthase_TM Location: 2 97354-2 982 72 bp Feature: gene Location: 298452-299681 bp Feature: domain Description: peptidase-T Location: 298458-299676 bp Feature: domain Description: peptidase-T Location: 2 98458-2 99676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00942 (acetylglutamate kinase; Provisional), argD (TIGR00707), RVT-GII, GIIM (pfam08388), DUF2922 (pfam11148), chaperone_ClpB (TIGR03346), AL_MDR (cd08252), LPG_synthase_TM (pfam03706), peptidase-T (TIGR01882)

Seq: UGIH01000001.1 (1993460 bp)
Overview 1 RT 1: 186875-194314 bp 2 RT 2: 341560-348526 bp 3 RT 3: 1039871-1047748 bp 4 RT 4: 1347090-1354731 bp 5 RT 5: 1806225-1813957 bp 6 RT 6: 1840324-1843481 bp Neighborhood of RT #1 [186875, 194349] ElaA UvrD RVT-GII GIIM CwlO1 PRK08581 Zn_peptidase Neighborhood of RT #2 [341560, 348534] MdlB ABC_MutS-like RVT-GII GIIM Mga PTS_IIB_bgl_like Neighborhood of RT #3 [1039871, 1047748] GramPos_pilinD1 GramPos_pilinD1 RrgB_K2N_iso_D2 GramPos_pilinD1 RVT-GII RVT-GII GIIM RVT-GII GIIM Neighborhood of RT #4 [1347090, 1354868] Sortase_A PRK08581 Peptidase_M23 RVT-GII RVT-GII GIIM RVT-GII DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #5 [1806225, 1813986] RelB_DinJ FtsK_SpoIIIE RVT-GII RVT-GII GIIM RVT-GII HNHc TpcC YibE_F Neighborhood of RT #6 [1840324, 1843516] DUF3173 Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like RVT-GII KOG4768 Relaxase Feature: gene Location: 186875-187312 bp Feature: domain Description: ElaA Location: 186938-187301 bp Feature: domain Description: ElaA Location: 18693 8-1873 01 bp Feature: gene Location: 187339-189486 bp Feature: domain Description: UvrD Location: 187462-189475 bp Feature: domain Description: UvrD Location: 187462-189475 bp Feature: gene Location: 189823-191211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190144-190759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190144-190759 bp Feature: domain Description: GIIM Note: maturase Location: 190816-191032 bp Feature: domain Description: GIIM Note: maturase Location: 190816-19103 2 bp Feature: gene Location: 191693-193039 bp Feature: domain Description: CwlO1 Location: 191696-192527 bp Feature: domain Description: CwlO1 Location: 191696-192527 bp Feature: domain Description: PRK08581 Location: 192689-192947 bp Feature: domain Description: PRK08581 Location: 192689-192947 bp Feature: gene Location: 193456-194349 bp Feature: domain Description: Zn_peptidase Location: 193459-194314 bp Feature: domain Description: Zn_peptidase Location: 193 459-1943 14 bp Feature: gene Location: 341560-343317 bp Feature: domain Description: MdlB Location: 341581-343294 bp Feature: domain Description: MdlB Location: 3 41581-3 43 294 bp Feature: gene Location: 343437-344846 bp Feature: domain Description: ABC_MutS-like Location: 344181-344751 bp Feature: domain Description: ABC_MutS-like Location: 3 44181-3 44751 bp Feature: gene Location: 344930-346174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345134-345791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4513 4-3 45791 bp Feature: domain Description: GIIM Note: maturase Location: 345872-346088 bp Feature: domain Description: GIIM Note: maturase Location: 3 45872-3 46088 bp Feature: gene Location: 346690-346962 bp Feature: gene Location: 347059-348534 bp Feature: domain Description: Mga Location: 347308-347560 bp Feature: domain Description: Mga Location: 3 473 08-3 47560 bp Feature: domain Description: PTS_IIB_bgl_like Location: 348268-348526 bp Feature: domain Description: PTS_IIB_bgl_like Location: 3 48268-3 48526 bp Feature: gene Location: 1039871-1040647 bp Feature: domain Description: GramPos_pilinD1 Location: 1039988-1040318 bp Feature: domain Description: GramPos_pilinD1 Location: 103 9988-10403 18 bp Feature: gene Location: 1040637-1042226 bp Feature: domain Description: GramPos_pilinD1 Location: 1040742-1041201 bp Feature: domain Description: GramPos_pilinD1 Location: 1040742-1041201 bp Feature: domain Description: RrgB_K2N_iso_D2 Location: 1041234-1041708 bp Feature: domain Description: RrgB_K2N_iso_D2 Location: 104123 4-1041708 bp Feature: domain Description: GramPos_pilinD1 Location: 1041741-1042101 bp Feature: domain Description: GramPos_pilinD1 Location: 1041741-1042101 bp Feature: gene Location: 1042717-1043520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1043038-1043512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1043 03 8-1043 512 bp Feature: gene Location: 1043645-1043776 bp Feature: gene Location: 1044052-1045296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044256-1044913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044256-1044913 bp Feature: domain Description: GIIM Note: maturase Location: 1044994-1045210 bp Feature: domain Description: GIIM Note: maturase Location: 1044994-1045210 bp Feature: gene Location: 1045415-1045969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045427-1045517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045427-1045517 bp Feature: domain Description: GIIM Note: maturase Location: 1045574-1045790 bp Feature: domain Description: GIIM Note: maturase Location: 1045574-1045790 bp Feature: gene Location: 1046154-1046324 bp Feature: gene Location: 1047536-1047748 bp Feature: gene Location: 1347090-1347917 bp Feature: domain Description: Sortase_A Location: 1347228-1347606 bp Feature: domain Description: Sortase_A Location: 13 47228-13 47606 bp Feature: gene Location: 1348063-1349400 bp Feature: domain Description: PRK08581 Location: 1348162-1349029 bp Feature: domain Description: PRK08581 Location: 13 48162-13 49029 bp Feature: domain Description: Peptidase_M23 Location: 1349122-1349374 bp Feature: domain Description: Peptidase_M23 Location: 13 49122-13 493 74 bp Feature: gene Location: 1350078-1350926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1350372-1350918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 503 72-13 50918 bp Feature: gene Location: 1351051-1351182 bp Feature: gene Location: 1351458-1352702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1351662-1352319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 51662-13 523 19 bp Feature: domain Description: GIIM Note: maturase Location: 1352400-1352616 bp Feature: domain Description: GIIM Note: maturase Location: 13 52400-13 52616 bp Feature: gene Location: 1352806-1353228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1352812-1352932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 52812-13 5293 2 bp Feature: gene Location: 1353283-1353468 bp Feature: gene Location: 1353618-1354868 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1353633-1354116 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 13 53 63 3 -13 54116 bp Feature: domain Description: Transposase_20 Location: 1354473-1354731 bp Feature: domain Description: Transposase_20 Location: 13 54473 -13 5473 1 bp Feature: gene Location: 1806225-1806560 bp Feature: domain Description: RelB_DinJ Location: 1806429-1806552 bp Feature: domain Description: RelB_DinJ Location: 1806429-1806552 bp Feature: gene Location: 1806622-1807620 bp Feature: domain Description: FtsK_SpoIIIE Location: 1807294-1807540 bp Feature: domain Description: FtsK_SpoIIIE Location: 1807294-1807540 bp Feature: gene Location: 1808226-1809173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1808490-1809165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1808490-1809165 bp Feature: gene Location: 1809298-1809429 bp Feature: gene Location: 1809705-1810949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1809909-1810566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1809909-1810566 bp Feature: domain Description: GIIM Note: maturase Location: 1810647-1810863 bp Feature: domain Description: GIIM Note: maturase Location: 1810647-1810863 bp Feature: gene Location: 1811035-1811994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1811038-1811179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 181103 8-1811179 bp Feature: domain Description: HNHc Note: nucleases Location: 1811704-1811869 bp Feature: domain Description: HNHc Note: nucleases Location: 1811704-1811869 bp Feature: gene Location: 1812165-1813082 bp Feature: domain Description: TpcC Location: 1812402-1813068 bp Feature: domain Description: TpcC Location: 1812402-1813 068 bp Feature: gene Location: 1813231-1813986 bp Feature: domain Description: YibE_F Location: 1813243-1813957 bp Feature: domain Description: YibE_F Location: 1813 243 -1813 957 bp Feature: gene Location: 1840324-1840509 bp Feature: domain Description: DUF3173 Location: 1840330-1840501 bp Feature: domain Description: DUF3 173 Location: 18403 3 0-1840501 bp Feature: gene Location: 1840514-1841662 bp Feature: domain Description: Arm-DNA-bind_4 Location: 1840559-1840691 bp Feature: domain Description: Arm-DNA-bind_4 Location: 1840559-1840691 bp Feature: domain Description: Phage_int_SAM_3 Location: 1840715-1840883 bp Feature: domain Description: Phage_int_SAM_3 Location: 1840715-1840883 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1841081-1841606 bp Feature: domain Description: INT_ICEBs1_C_like Location: 1841081-1841606 bp Feature: gene Location: 1842019-1842435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1842103-1842400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1842103 -1842400 bp Feature: gene Location: 1842350-1842622 bp Feature: domain Description: KOG4768 Location: 1842374-1842575 bp Feature: domain Description: KOG4768 Location: 18423 74-1842575 bp Feature: gene Location: 1843154-1843516 bp Feature: domain Description: Relaxase Location: 1843184-1843481 bp Feature: domain Description: Relaxase Location: 1843 184-1843 481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ElaA (COG2153), UvrD (COG0210), RVT-GII, GIIM (pfam08388), CwlO1 (COG3883), PRK08581 (amidase domain-containing protein), Zn_peptidase (pfam04228), MdlB (COG1132), ABC_MutS-like (cd03283), Mga (pfam05043)
PTS_IIB_bgl_like (cd05568), GramPos_pilinD1 (pfam16555), RrgB_K2N_iso_D2 (TIGR04226), Sortase_A (cd06165), Peptidase_M23 (pfam01551), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), HNHc (smart00507)
TpcC (pfam12642), YibE_F (pfam07907), DUF3173 (pfam11372), Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Relaxase (pfam03432)