myRT

myRT report for GCA_900448095.1_43116_E01

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Seq: UFYX01000004.1 (252699 bp)
Overview 1 RT 1: 50710-56009 bp 2 RT 2: 78671-81968 bp 3 RT 3: 86297-88970 bp 4 RT 4: 158964-161618 bp Neighborhood of RT #1 [50710, 56011] RVT-GII GIIM InsG RVT-GII Tra5 PRK09409 Neighborhood of RT #2 [78671, 82036] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 Neighborhood of RT #3 [86297, 88972] RVT-GII GIIM HNHc PHA02517 InsE Neighborhood of RT #4 [158964, 161618] COG3547 RVT-GII GIIM Feature: gene Location: 50710-50952 bp Feature: gene Location: 51124-51279 bp Feature: gene Location: 51305-51832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51311-51455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 31 1 -51 455 bp Feature: domain Description: GIIM Note: maturase Location: 51539-51755 bp Feature: domain Description: GIIM Note: maturase Location: 51 539-51 755 bp Feature: gene Location: 52049-53161 bp Feature: domain Description: InsG Location: 52052-53090 bp Feature: domain Description: InsG Location: 52052-53090 bp Feature: gene Location: 53481-54608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53781-54438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53781 -54438 bp Feature: gene Location: 54621-54842 bp Feature: domain Description: Tra5 Location: 54633-54825 bp Feature: domain Description: Tra5 Location: 54633-54825 bp Feature: gene Location: 55106-56011 bp Feature: domain Description: PRK09409 Location: 55109-56009 bp Feature: domain Description: PRK09409 Location: 551 09-56009 bp Feature: gene Location: 78671-79702 bp Feature: domain Description: HTH_23 Location: 78749-78890 bp Feature: domain Description: HTH_23 Location: 78749-78890 bp Feature: domain Description: HTH_33 Location: 78995-79142 bp Feature: domain Description: HTH_33 Location: 78995-791 42 bp Feature: domain Description: DDE_3 Location: 79199-79619 bp Feature: domain Description: DDE_3 Location: 791 99-7961 9 bp Feature: gene Location: 79846-80427 bp Feature: domain Description: HTH_23 Location: 79954-80041 bp Feature: domain Description: HTH_23 Location: 79954-80041 bp Feature: domain Description: InsE Location: 80170-80365 bp Feature: domain Description: InsE Location: 801 70-80365 bp Feature: gene Location: 80608-80868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80611-80842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8061 1 -80842 bp Feature: gene Location: 80878-81306 bp Feature: gene Location: 81320-82036 bp Feature: domain Description: DDE_Tnp_1 Location: 81326-81968 bp Feature: domain Description: DDE_Tnp_1 Location: 81 326-81 968 bp Feature: gene Location: 86297-86491 bp Feature: gene Location: 86549-86770 bp Feature: gene Location: 86803-87564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86812-86872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8681 2-86872 bp Feature: domain Description: GIIM Note: maturase Location: 86926-87157 bp Feature: domain Description: GIIM Note: maturase Location: 86926-871 57 bp Feature: domain Description: HNHc Note: nucleases Location: 87358-87517 bp Feature: domain Description: HNHc Note: nucleases Location: 87358-8751 7 bp Feature: gene Location: 87763-88410 bp Feature: domain Description: PHA02517 Location: 87766-88408 bp Feature: domain Description: PHA0251 7 Location: 87766-88408 bp Feature: gene Location: 88646-88972 bp Feature: domain Description: InsE Location: 88649-88970 bp Feature: domain Description: InsE Location: 88649-88970 bp Feature: gene Location: 158964-159449 bp Feature: domain Description: COG3547 Location: 158982-159435 bp Feature: domain Description: COG3547 Location: 1 58982-1 59435 bp Feature: gene Location: 159545-159712 bp Feature: gene Location: 159738-160955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159924-160578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 59924-1 60578 bp Feature: domain Description: GIIM Note: maturase Location: 160656-160878 bp Feature: domain Description: GIIM Note: maturase Location: 1 60656-1 60878 bp Feature: gene Location: 160966-161385 bp Feature: gene Location: 161424-161618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), InsG (COG3385), Tra5 (COG2801), PRK09409 (IS2 transposase TnpB; Reviewed), HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), InsE (COG2963), DDE_Tnp_1 (pfam01609)
HNHc (smart00507), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase )

Seq: UFYX01000005.1 (4969992 bp)
Overview 1 RT 1: 531307-536636 bp 2 RT 2: 3520339-3527850 bp Neighborhood of RT #1 [531307, 536647] Q RVT-AbiP2 Phage_GPA DUF5405 Neighborhood of RT #2 [3520339, 3527852] InsG RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 531307-532068 bp Feature: domain Description: Q Location: 531328-532060 bp Feature: domain Description: Q Location: 53132 8-532 060 bp Feature: gene Location: 532107-532268 bp Feature: gene Location: 532281-533993 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 532863-533316 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 532 863-533316 bp Feature: gene Location: 534097-536244 bp Feature: domain Description: Phage_GPA Location: 534358-535345 bp Feature: domain Description: Phage_GPA Location: 534358-535345 bp Feature: gene Location: 536372-536647 bp Feature: domain Description: DUF5405 Location: 536390-536636 bp Feature: domain Description: DUF5405 Location: 536390-536636 bp Feature: gene Location: 3520339-3521451 bp Feature: domain Description: InsG Location: 3520342-3521380 bp Feature: domain Description: InsG Location: 352 0342 -352 1380 bp Feature: gene Location: 3521474-3521614 bp Feature: gene Location: 3521660-3523006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3521756-3522488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352 1756-352 2 488 bp Feature: domain Description: GIIM Note: maturase Location: 3522563-3522761 bp Feature: domain Description: GIIM Note: maturase Location: 352 2 563-352 2 761 bp Feature: gene Location: 3523183-3523569 bp Feature: domain Description: PHA02517 Location: 3523186-3523567 bp Feature: domain Description: PHA02 517 Location: 352 3186-352 3567 bp Feature: gene Location: 3523734-3527852 bp Feature: domain Description: ESPR Location: 3523737-3523806 bp Feature: domain Description: ESPR Location: 352 3737-352 3806 bp Feature: domain Description: Peptidase_S6 Location: 3523887-3526059 bp Feature: domain Description: Peptidase_S6 Location: 352 3887-352 6059 bp Feature: domain Description: autotrans_barl Location: 3526623-3527850 bp Feature: domain Description: autotrans_barl Location: 352 662 3-352 7850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-AbiP2, Phage_GPA (pfam05840), DUF5405 (pfam17399), InsG (COG3385), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395)
autotrans_barl (TIGR01414)