myRT

myRT report for GCA_900448135.1_59235_G01

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Seq: UARQ01000008.1 Escherichia coli strain NCTC13919 genome assembly, contig: ERS1943193SCcontig000008, whole genome shotgun sequence (3174015 bp)
Overview 1 RT 1: 1606454-1609780 bp 2 RT 2: 2311937-2317968 bp Neighborhood of RT #1 [1606454, 1609780] FRG RVT-Retrons HTH_XRE Neighborhood of RT #2 [2311937, 2317968] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 1606454-1606603 bp Feature: gene Location: 1606642-1608006 bp Feature: domain Description: FRG Location: 1607209-1607494 bp Feature: domain Description: FRG Location: 1 607209-1 607494 bp Feature: gene Location: 1608115-1609065 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1608295-1608838 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 608295-1 608838 bp Feature: gene Location: 1609031-1609351 bp Feature: domain Description: HTH_XRE Location: 1609046-1609205 bp Feature: domain Description: HTH_XRE Location: 1 609046-1 609205 bp Feature: gene Location: 1609388-1609780 bp Feature: gene Location: 2311937-2312857 bp Feature: domain Description: AbiEii Location: 2311979-2312720 bp Feature: domain Description: AbiEii Location: 231 1 979-231 2720 bp Feature: gene Location: 2312844-2313647 bp Feature: domain Description: AbiEi_3_N Location: 2312877-2313138 bp Feature: domain Description: AbiEi_3_N Location: 231 2877-231 31 38 bp Feature: domain Description: AbiEi_3 Location: 2313150-2313606 bp Feature: domain Description: AbiEi_3 Location: 231 31 50-231 3606 bp Feature: gene Location: 2313942-2317151 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2314470-2314959 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 231 4470-231 4959 bp Feature: domain Description: nitrilase Location: 2316465-2317062 bp Feature: domain Description: nitrilase Location: 231 6465-231 7062 bp Feature: gene Location: 2317312-2317452 bp Feature: domain Description: Phage_ASH Location: 2317339-2317432 bp Feature: domain Description: Phage_ASH Location: 231 7339-231 7432 bp Feature: gene Location: 2317498-2317968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530), AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: UARQ01000006.1 Escherichia coli strain NCTC13919 genome assembly, contig: ERS1943193SCcontig000006, whole genome shotgun sequence (1355576 bp)
Overview 1 RT 1: 262596-268027 bp Neighborhood of RT #1 [262596, 268035] RVT-GII Intron_maturas2 HNHc PRK10341 PRK08638 Feature: gene Location: 262596-262733 bp Feature: gene Location: 263613-263822 bp Feature: gene Location: 263957-265858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264224-265055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 642 2 4-2 65055 bp Feature: domain Description: Intron_maturas2 Location: 265169-265427 bp Feature: domain Description: Intron_maturas2 Location: 2 65169-2 6542 7 bp Feature: domain Description: HNHc Note: nucleases Location: 265601-265763 bp Feature: domain Description: HNHc Note: nucleases Location: 2 65601-2 65763 bp Feature: gene Location: 265898-266947 bp Feature: domain Description: PRK10341 Location: 266012-266942 bp Feature: domain Description: PRK10341 Location: 2 66012 -2 66942 bp Feature: gene Location: 267046-268035 bp Feature: domain Description: PRK08638 Location: 267049-268027 bp Feature: domain Description: PRK08638 Location: 2 67049-2 6802 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK10341 (transcriptional regulator TdcA), PRK08638 (bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB)

Seq: UARQ01000007.1 Escherichia coli strain NCTC13919 genome assembly, contig: ERS1943193SCcontig000007, whole genome shotgun sequence (670968 bp)
Overview 1 RT 1: 199192-203483 bp 2 RT 2: 228186-232504 bp Neighborhood of RT #1 [199192, 203483] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #2 [228186, 232560] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 199192-200454 bp Feature: domain Description: YesM Location: 199705-200446 bp Feature: domain Description: YesM Location: 199705-200446 bp Feature: gene Location: 200484-200654 bp Feature: gene Location: 201004-201525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201010-201292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201010-201292 bp Feature: domain Description: GIIM Note: maturase Location: 201340-201520 bp Feature: domain Description: GIIM Note: maturase Location: 2013 40-201520 bp Feature: gene Location: 201553-202092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201883-201961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201883 -201961 bp Feature: gene Location: 202123-202320 bp Feature: gene Location: 202578-203483 bp Feature: gene Location: 228186-229010 bp Feature: gene Location: 229137-229427 bp Feature: domain Description: PHA02517 Location: 229143-229362 bp Feature: domain Description: PHA02517 Location: 229143 -2293 62 bp Feature: gene Location: 230019-231542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 230292-231024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 0292-23 1024 bp Feature: domain Description: GIIM Note: maturase Location: 231099-231297 bp Feature: domain Description: GIIM Note: maturase Location: 23 1099-23 1297 bp Feature: gene Location: 231719-232105 bp Feature: domain Description: PHA02517 Location: 231722-232103 bp Feature: domain Description: PHA02517 Location: 23 1722-23 2103 bp Feature: gene Location: 232210-232560 bp Feature: domain Description: InsE Location: 232219-232504 bp Feature: domain Description: InsE Location: 23 2219-23 2504 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)