myRT

myRT report for GCA_900448605.1_38344_E01

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Seq: UGAN01000002.1 (4926035 bp)
Overview 1 RT 1: 87317-91199 bp 2 RT 2: 1233075-1236244 bp Neighborhood of RT #1 [87317, 91204] rph pyrE RVT-Retrons slmA dut Neighborhood of RT #2 [1233075, 1236246] PRK09678 RVT-UG11 SmpB PRK10724 Feature: gene Location: 87317-88033 bp Ori: STG07120.1 Gene: rph Feature: domain Description: rph Location: 87320-88028 bp Feature: domain Description: rph Location: 87320-88028 bp Feature: gene Location: 88099-88740 bp Ori: STG07121.1 Gene: pyrE Feature: domain Description: pyrE Location: 88102-88735 bp Feature: domain Description: pyrE Location: 881 02-88735 bp Feature: gene Location: 89038-89997 bp Ori: STG07122.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89173-89722 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 891 73-89722 bp Feature: gene Location: 90043-90639 bp Ori: STG07123.1 Gene: slmA Feature: domain Description: slmA Location: 90049-90625 bp Feature: domain Description: slmA Location: 90049-90625 bp Feature: gene Location: 90746-91204 bp Ori: STG07124.1 Gene: dut Feature: domain Description: dut Location: 90752-91199 bp Feature: domain Description: dut Location: 90752-91 1 99 bp Feature: gene Location: 1233075-1233293 bp Ori: STG08238.1 Feature: domain Description: PRK09678 Location: 1233078-1233276 bp Feature: domain Description: PRK09678 Location: 1 233078-1 233276 bp Feature: gene Location: 1233555-1233728 bp Feature: gene Location: 1233697-1234470 bp Ori: STG08240.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1233832-1234285 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 233832-1 234285 bp Feature: gene Location: 1235156-1235638 bp Ori: STG08241.1 Gene: smpB Feature: domain Description: SmpB Location: 1235186-1235633 bp Feature: domain Description: SmpB Location: 1 2351 86-1 235633 bp Feature: gene Location: 1235770-1236246 bp Ori: STG08242.1 Gene: yfjG Feature: domain Description: PRK10724 Location: 1235776-1236244 bp Feature: domain Description: PRK1 0724 Location: 1 235776-1 236244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG11, SmpB (pfam01668), PRK10724 (type II toxin-antitoxin system RatA family toxin)

Seq: UGAN01000003.1 (114026 bp)
Overview 1 RT 1: 13663-18452 bp Neighborhood of RT #1 [13663, 18452] DUF1281 RVT_N RVT-GII GIIM HNHc PRK13699 Feature: gene Location: 13663-13872 bp Feature: gene Location: 14333-14692 bp Ori: STH32809.1 Gene: yfdA Feature: domain Description: DUF1281 Location: 14342-14657 bp Feature: domain Description: DUF12 81 Location: 14342 -14657 bp Feature: gene Location: 15297-16997 bp Ori: STH32810.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 15351-15594 bp Feature: domain Description: RVT_N Location: 15351-15594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15639-16275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15639-162 75 bp Feature: domain Description: GIIM Note: maturase Location: 16326-16560 bp Feature: domain Description: GIIM Note: maturase Location: 1632 6-16560 bp Feature: domain Description: HNHc Note: nucleases Location: 16791-16941 bp Feature: domain Description: HNHc Note: nucleases Location: 16791-16941 bp Feature: gene Location: 17577-18230 bp Ori: STH32811.1 Gene: yhdJ_2 Feature: domain Description: PRK13699 Location: 17622-18228 bp Feature: domain Description: PRK13699 Location: 1762 2 -182 2 8 bp Feature: gene Location: 18231-18452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: UGAN01000005.1 (286741 bp)
Overview 1 RT 1: 192843-195445 bp 2 RT 2: 259736-262815 bp 3 RT 3: 274825-279300 bp Neighborhood of RT #1 [192843, 195447] DDE_Tnp_1 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [259736, 262967] InsE InsA RVT_N RVT-GII TnpB_IS66 HTH_23 InsE Neighborhood of RT #3 [274825, 279300] InsG RVT-GII GIIM PHA02517 Feature: gene Location: 192843-193256 bp Ori: STH33153.1 Feature: domain Description: DDE_Tnp_1 Location: 193014-193251 bp Feature: domain Description: DDE_Tnp_1 Location: 193 014-193 251 bp Feature: gene Location: 193348-193488 bp Feature: gene Location: 193535-194002 bp Ori: STH33155.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193631-193973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 63 1-193 973 bp Feature: gene Location: 194333-194884 bp Ori: STH33156.1 Feature: domain Description: GIIM Note: maturase Location: 194441-194660 bp Feature: domain Description: GIIM Note: maturase Location: 194441-194660 bp Feature: gene Location: 195001-195447 bp Ori: STH33157.1 Feature: domain Description: PHA02517 Location: 195004-195445 bp Feature: domain Description: PHA02517 Location: 195004-195445 bp Feature: gene Location: 259736-260155 bp Ori: STH33243.1 Feature: domain Description: InsE Location: 259751-260135 bp Feature: domain Description: InsE Location: 259751-26013 5 bp Feature: gene Location: 260187-260459 bp Ori: STH33244.1 Gene: insA_6 Feature: domain Description: InsA Location: 260193-260406 bp Feature: domain Description: InsA Location: 260193 -260406 bp Feature: gene Location: 260488-261411 bp Ori: STH33245.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 260536-260779 bp Feature: domain Description: RVT_N Location: 26053 6-260779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260824-261394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260824-2613 94 bp Feature: gene Location: 262009-262320 bp Ori: STH33246.1 Feature: domain Description: TnpB_IS66 Location: 262036-262315 bp Feature: domain Description: TnpB_IS66 Location: 26203 6-2623 15 bp Feature: gene Location: 262320-262967 bp Ori: STH33247.1 Feature: domain Description: HTH_23 Location: 262371-262470 bp Feature: domain Description: HTH_23 Location: 2623 71-262470 bp Feature: domain Description: InsE Location: 262599-262815 bp Feature: domain Description: InsE Location: 262599-262815 bp Feature: gene Location: 274825-275937 bp Ori: STH33256.1 Feature: domain Description: InsG Location: 274828-275866 bp Feature: domain Description: InsG Location: 274828-275866 bp Feature: gene Location: 275960-276100 bp Feature: gene Location: 276147-277493 bp Ori: STH33258.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276243-276975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276243 -276975 bp Feature: domain Description: GIIM Note: maturase Location: 277050-277248 bp Feature: domain Description: GIIM Note: maturase Location: 277050-277248 bp Feature: gene Location: 277610-278056 bp Ori: STH33259.1 Feature: domain Description: PHA02517 Location: 277613-278054 bp Feature: domain Description: PHA02517 Location: 277613 -278054 bp Feature: gene Location: 278527-279300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), InsA (COG3677), RVT_N (pfam13655), TnpB_IS66 (pfam05717), HTH_23 (pfam13384), InsG (COG3385)