myRT

myRT report for GCA_900448655.1_38129_G01

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Seq: UGAR01000006.1 (3582603 bp)
Overview 1 RT 1: 1027281-1032752 bp Neighborhood of RT #1 [1027281, 1032766] Psu PRK09678 RVT-UG8 RVT-UG3 INT_P4_C PRK09692 Feature: gene Location: 1027281-1027652 bp Feature: domain Description: Psu Location: 1027287-1027632 bp Feature: domain Description: Psu Location: 1 027287-1 027632 bp Feature: gene Location: 1027658-1027930 bp Feature: domain Description: PRK09678 Location: 1027667-1027847 bp Feature: domain Description: PRK09678 Location: 1 027667-1 027847 bp Feature: gene Location: 1028382-1030385 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1028877-1029324 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 028877-1 029324 bp Feature: gene Location: 1030389-1031585 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1030674-1031136 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 030674-1 031 1 36 bp Feature: gene Location: 1031587-1031841 bp Feature: domain Description: INT_P4_C Location: 1031590-1031821 bp Feature: domain Description: INT_P4_C Location: 1 031 590-1 031 821 bp Feature: gene Location: 1031855-1032766 bp Feature: domain Description: PRK09692 Location: 1031861-1032752 bp Feature: domain Description: PRK09692 Location: 1 031 861 -1 032752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG8, RVT-UG3, INT_P4_C (cd00801), PRK09692 (Integrase; provisional)

Seq: UGAR01000002.1 (66659 bp)
Overview 1 RT 1: 2708-5749 bp Neighborhood of RT #1 [2708, 5749] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 2708-2848 bp Feature: gene Location: 2870-3040 bp Feature: domain Description: RVT_N Location: 2927-3017 bp Feature: domain Description: RVT_N Location: 2 92 7-3017 bp Feature: gene Location: 3256-4593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3259-3862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 59-3862 bp Feature: domain Description: YkfC Location: 3994-4150 bp Feature: domain Description: YkfC Location: 3994-4150 bp Feature: domain Description: HNHc Note: nucleases Location: 4378-4537 bp Feature: domain Description: HNHc Note: nucleases Location: 4378-4537 bp Feature: gene Location: 4670-5572 bp Feature: domain Description: DUF1281 Location: 4739-5267 bp Feature: domain Description: DUF12 81 Location: 4739-52 67 bp Feature: domain Description: DUF1281_C Location: 5273-5513 bp Feature: domain Description: DUF12 81_C Location: 52 73-5513 bp Feature: gene Location: 5576-5749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: UGAR01000004.1 (137199 bp)
Overview 1 RT 1: 129980-133806 bp Neighborhood of RT #1 [129980, 133806] DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 129980-130498 bp Feature: domain Description: DDE_Tnp_IS66 Location: 129998-130343 bp Feature: domain Description: DDE_Tnp_IS66 Location: 129998-13 03 43 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 130364-130475 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 13 03 64-13 0475 bp Feature: gene Location: 130633-130845 bp Feature: domain Description: PHA02517 Location: 130636-130780 bp Feature: domain Description: PHA02517 Location: 13 063 6-13 0780 bp Feature: gene Location: 131437-132960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 131710-132442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 1710-13 2442 bp Feature: domain Description: GIIM Note: maturase Location: 132517-132715 bp Feature: domain Description: GIIM Note: maturase Location: 13 2517-13 2715 bp Feature: gene Location: 133077-133523 bp Feature: domain Description: PHA02517 Location: 133080-133521 bp Feature: domain Description: PHA02517 Location: 13 3 080-13 3 521 bp Feature: gene Location: 133489-133806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UGAR01000001.1 (42379 bp)
Overview 1 RT 1: 6397-9881 bp Neighborhood of RT #1 [6397, 9881] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 6397-6549 bp Feature: gene Location: 6619-7521 bp Feature: domain Description: DUF1281 Location: 6688-7216 bp Feature: domain Description: DUF1281 Location: 6688-7216 bp Feature: domain Description: DUF1281_C Location: 7222-7462 bp Feature: domain Description: DUF1281_C Location: 7222-74 62 bp Feature: gene Location: 7598-9322 bp Feature: domain Description: RVT_N Location: 7655-7892 bp Feature: domain Description: RVT_N Location: 7655-7892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7943-8591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794 3-8591 bp Feature: domain Description: YkfC Location: 8723-8879 bp Feature: domain Description: YkfC Location: 8723-8879 bp Feature: domain Description: HNHc Note: nucleases Location: 9107-9266 bp Feature: domain Description: HNHc Note: nucleases Location: 9107-9266 bp Feature: gene Location: 9363-9503 bp Feature: gene Location: 9585-9881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)