myRT

myRT report for GCA_900448695.1_38273_D01

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Seq: UGAK01000003.1 Escherichia coli strain NCTC7927 genome assembly, contig: ERS715398SCcontig000003, whole genome shotgun sequence (5325201 bp)
Overview 1 RT 1: 923472-927826 bp 2 RT 2: 4110447-4115941 bp 3 RT 3: 4130859-4133951 bp 4 RT 4: 4643237-4647123 bp 5 RT 5: 4820202-4824389 bp Neighborhood of RT #1 [923472, 927849] HTH_XRE RVT-Retrons PRK13889 TraD Neighborhood of RT #2 [4110447, 4115961] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Neighborhood of RT #3 [4130859, 4134016] PHA02517 RVT-GII PHA02517 Neighborhood of RT #4 [4643237, 4647125] PRK09692 RVT-UG5 DDE_Tnp_IS1 Neighborhood of RT #5 [4820202, 4824389] PFLE_PFLC RVT-GII RVT-GII GIIM InsE Feature: gene Location: 923472-923687 bp Feature: gene Location: 923778-924059 bp Feature: domain Description: HTH_XRE Location: 923793-923958 bp Feature: domain Description: HTH_XRE Location: 923793-923958 bp Feature: gene Location: 924177-925151 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 924192-924744 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9241 92-924744 bp Feature: gene Location: 925228-926730 bp Feature: domain Description: PRK13889 Location: 925231-925810 bp Feature: domain Description: PRK1 3889 Location: 925231 -92581 0 bp Feature: gene Location: 927538-927849 bp Feature: domain Description: TraD Location: 927652-927826 bp Feature: domain Description: TraD Location: 927652-927826 bp Feature: gene Location: 4110447-4111367 bp Feature: domain Description: AbiEii Location: 4110489-4111128 bp Feature: domain Description: AbiEii Location: 41 1 0489-41 1 1 1 28 bp Feature: gene Location: 4111354-4112136 bp Feature: domain Description: AbiEi_3_N Location: 4111360-4111627 bp Feature: domain Description: AbiEi_3_N Location: 41 1 1 360-41 1 1 627 bp Feature: domain Description: AbiEi_3 Location: 4111639-4112095 bp Feature: domain Description: AbiEi_3 Location: 41 1 1 639-41 1 2095 bp Feature: gene Location: 4112452-4114812 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4112980-4113469 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 41 1 2980-41 1 3469 bp Feature: gene Location: 4114848-4115660 bp Feature: domain Description: nitrilase Location: 4114977-4115571 bp Feature: domain Description: nitrilase Location: 41 1 4977-41 1 5571 bp Feature: gene Location: 4115821-4115961 bp Feature: domain Description: Phage_ASH Location: 4115848-4115941 bp Feature: domain Description: Phage_ASH Location: 41 1 5848-41 1 5941 bp Feature: gene Location: 4130859-4131305 bp Feature: domain Description: PHA02517 Location: 4130862-4131303 bp Feature: domain Description: PHA0251 7 Location: 41 30862-41 31 303 bp Feature: gene Location: 4131422-4131769 bp Feature: gene Location: 4131773-4132945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4132046-4132778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 32046-41 32778 bp Feature: gene Location: 4132899-4133324 bp Feature: gene Location: 4133537-4134016 bp Feature: domain Description: PHA02517 Location: 4133597-4133951 bp Feature: domain Description: PHA0251 7 Location: 41 33597-41 33951 bp Feature: gene Location: 4643237-4644493 bp Feature: domain Description: PRK09692 Location: 4643246-4644449 bp Feature: domain Description: PRK09692 Location: 4643246-4644449 bp Feature: gene Location: 4644585-4645133 bp Feature: gene Location: 4645421-4646056 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4645427-4645589 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4645427-4645589 bp Feature: gene Location: 4646078-4646719 bp Feature: gene Location: 4646730-4647125 bp Feature: domain Description: DDE_Tnp_IS1 Location: 4646736-4647123 bp Feature: domain Description: DDE_Tnp_IS1 Location: 4646736-46471 23 bp Feature: gene Location: 4820202-4821119 bp Feature: domain Description: PFLE_PFLC Location: 4820238-4821093 bp Feature: domain Description: PFLE_PFLC Location: 4820238-4821 093 bp Feature: gene Location: 4821256-4822161 bp Feature: gene Location: 4822637-4823176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4822967-4823045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4822967-4823045 bp Feature: gene Location: 4823204-4823725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4823210-4823492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482321 0-4823492 bp Feature: domain Description: GIIM Note: maturase Location: 4823540-4823720 bp Feature: domain Description: GIIM Note: maturase Location: 4823540-4823720 bp Feature: gene Location: 4823913-4824239 bp Feature: domain Description: InsE Location: 4823916-4824237 bp Feature: domain Description: InsE Location: 482391 6-4824237 bp Feature: gene Location: 4824261-4824389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), TraD (pfam06412), AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)
PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, PRK09692 (Integrase; provisional), DDE_Tnp_IS1 (pfam03400), PFLE_PFLC (TIGR02494), GIIM (pfam08388), InsE (COG2963)