myRT

myRT report for GCA_900449395.1_38977_B01

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Seq: UGCY01000004.1 (4935580 bp)
Overview 1 RT 1: 1087157-1095911 bp Neighborhood of RT #1 [1087157, 1095925] mutS1 INT_Rci_Hp1_C INT_P4_C RVT-UG8 Tra5 Feature: gene Location: 1087157-1089739 bp Feature: domain Description: mutS1 Location: 1087208-1089728 bp Feature: domain Description: mutS1 Location: 1 087208-1 089728 bp Feature: gene Location: 1089884-1091344 bp Feature: domain Description: INT_Rci_Hp1_C Location: 1090259-1090466 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 090259-1 090466 bp Feature: domain Description: INT_P4_C Location: 1090685-1091222 bp Feature: domain Description: INT_P4_C Location: 1 090685-1 091 222 bp Feature: gene Location: 1092601-1094619 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1093171-1093621 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 0931 71 -1 093621 bp Feature: gene Location: 1094858-1095061 bp Feature: gene Location: 1095245-1095925 bp Feature: domain Description: Tra5 Location: 1095356-1095911 bp Feature: domain Description: Tra5 Location: 1 095356-1 09591 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT mutS1 (TIGR01070), INT_Rci_Hp1_C (cd00796), INT_P4_C (cd00801), RVT-UG8, Tra5 (COG2801)

Seq: UGCY01000003.1 (155954 bp)
Overview 1 RT 1: 37336-41128 bp 2 RT 2: 122877-126042 bp Neighborhood of RT #1 [37336, 41128] RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Neighborhood of RT #2 [122877, 126053] HlyC YkfC RVT-GII PHA02517 Feature: gene Location: 37336-37605 bp Feature: gene Location: 38086-38226 bp Feature: gene Location: 38248-39972 bp Feature: domain Description: RVT_N Location: 38305-38542 bp Feature: domain Description: RVT_N Location: 38305-38542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38593-39241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38593-392 41 bp Feature: domain Description: YkfC Location: 39373-39529 bp Feature: domain Description: YkfC Location: 39373-3952 9 bp Feature: domain Description: HNHc Note: nucleases Location: 39757-39916 bp Feature: domain Description: HNHc Note: nucleases Location: 39757-39916 bp Feature: gene Location: 40049-40951 bp Feature: domain Description: DUF1281 Location: 40118-40646 bp Feature: domain Description: DUF12 81 Location: 40118-40646 bp Feature: domain Description: DUF1281_C Location: 40652-40892 bp Feature: domain Description: DUF12 81_C Location: 40652 -40892 bp Feature: gene Location: 40955-41128 bp Feature: gene Location: 122877-123383 bp Feature: domain Description: HlyC Location: 122898-123258 bp Feature: domain Description: HlyC Location: 12 2 898-12 32 58 bp Feature: gene Location: 123464-124480 bp Feature: domain Description: YkfC Location: 124160-124430 bp Feature: domain Description: YkfC Location: 12 4160-12 4430 bp Feature: gene Location: 124452-125153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124458-125013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 4458-12 5013 bp Feature: gene Location: 125326-125511 bp Feature: gene Location: 125634-126053 bp Feature: domain Description: PHA02517 Location: 125637-126042 bp Feature: domain Description: PHA02 517 Location: 12 5637-12 6042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406), HlyC (pfam02794), PHA02517 (putative transposase OrfB; Reviewed)