myRT

myRT report for GCA_900449475.1_39282_F01

Download annotations/find similar RTs

Seq: UGDY01000003.1 Escherichia coli strain NCTC4169 genome assembly, contig: ERS744792SCcontig000003, whole genome shotgun sequence (5159110 bp)
Overview 1 RT 1: 570920-574328 bp 2 RT 2: 610259-614217 bp 3 RT 3: 627385-630996 bp 4 RT 4: 2089318-2093610 bp 5 RT 5: 2116977-2121298 bp 6 RT 6: 2353352-2356991 bp 7 RT 7: 2849059-2855302 bp 8 RT 8: 4082996-4086374 bp Neighborhood of RT #1 [570920, 574462] Dps RVT-GII GIIM IstB_IS21_ATP IstB_IS21 COG4584 COG4584 Neighborhood of RT #2 [610259, 614282] AbiEii PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [627385, 631061] PRK09413 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #4 [2089318, 2093610] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #5 [2116977, 2121351] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #6 [2353352, 2357158] InsE PHA02517 RVT-GII GIIM COG2085 Neighborhood of RT #7 [2849059, 2855439] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Neighborhood of RT #8 [4082996, 4086439] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 570920-571084 bp Feature: domain Description: Dps Location: 570923-571082 bp Feature: domain Description: Dps Location: 570923-571 082 bp Feature: gene Location: 571245-571412 bp Feature: gene Location: 571438-572487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 571456-572110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 571 456-5721 1 0 bp Feature: domain Description: GIIM Note: maturase Location: 572188-572413 bp Feature: domain Description: GIIM Note: maturase Location: 5721 88-57241 3 bp Feature: gene Location: 572629-573384 bp Feature: domain Description: IstB_IS21_ATP Location: 572701-572785 bp Feature: domain Description: IstB_IS21 _ATP Location: 572701 -572785 bp Feature: domain Description: IstB_IS21 Location: 572794-573319 bp Feature: domain Description: IstB_IS21 Location: 572794-57331 9 bp Feature: gene Location: 573401-574462 bp Feature: domain Description: COG4584 Location: 573407-573800 bp Feature: domain Description: COG4584 Location: 573407-573800 bp Feature: domain Description: COG4584 Location: 573914-574328 bp Feature: domain Description: COG4584 Location: 57391 4-574328 bp Feature: gene Location: 610259-611122 bp Feature: domain Description: AbiEii Location: 610367-611021 bp Feature: domain Description: AbiEii Location: 61 0367-61 1 021 bp Feature: gene Location: 611125-611571 bp Feature: domain Description: PHA02517 Location: 611128-611569 bp Feature: domain Description: PHA0251 7 Location: 61 1 1 28-61 1 569 bp Feature: gene Location: 611688-613211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 611961-612693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 1 961 -61 2693 bp Feature: domain Description: GIIM Note: maturase Location: 612768-612966 bp Feature: domain Description: GIIM Note: maturase Location: 61 2768-61 2966 bp Feature: gene Location: 613165-613590 bp Feature: gene Location: 613803-614282 bp Feature: domain Description: PHA02517 Location: 613863-614217 bp Feature: domain Description: PHA0251 7 Location: 61 3863-61 421 7 bp Feature: gene Location: 627385-627750 bp Feature: domain Description: PRK09413 Location: 627388-627748 bp Feature: domain Description: PRK0941 3 Location: 627388-627748 bp Feature: gene Location: 628012-628371 bp Feature: domain Description: PHA02517 Location: 628015-628369 bp Feature: domain Description: PHA0251 7 Location: 62801 5-628369 bp Feature: gene Location: 628488-630011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628761-629493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628761 -629493 bp Feature: domain Description: GIIM Note: maturase Location: 629568-629766 bp Feature: domain Description: GIIM Note: maturase Location: 629568-629766 bp Feature: gene Location: 629965-630390 bp Feature: gene Location: 630603-631061 bp Feature: domain Description: PHA02517 Location: 630711-630996 bp Feature: domain Description: PHA0251 7 Location: 63071 1 -630996 bp Feature: gene Location: 2089318-2090562 bp Feature: domain Description: YesM Location: 2089813-2090554 bp Feature: domain Description: YesM Location: 208981 3-2090554 bp Feature: gene Location: 2090611-2090781 bp Feature: gene Location: 2091131-2091652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2091137-2091419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2091 1 37-2091 41 9 bp Feature: domain Description: GIIM Note: maturase Location: 2091467-2091647 bp Feature: domain Description: GIIM Note: maturase Location: 2091 467-2091 647 bp Feature: gene Location: 2091680-2092219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2092010-2092088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209201 0-2092088 bp Feature: gene Location: 2092250-2092447 bp Feature: gene Location: 2092705-2093610 bp Feature: gene Location: 2116977-2117801 bp Feature: gene Location: 2117928-2118218 bp Feature: domain Description: PHA02517 Location: 2117934-2118153 bp Feature: domain Description: PHA0251 7 Location: 21 1 7934-21 1 81 53 bp Feature: gene Location: 2118810-2120333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2119083-2119815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 9083-21 1 981 5 bp Feature: domain Description: GIIM Note: maturase Location: 2119890-2120088 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 9890-21 20088 bp Feature: gene Location: 2120510-2120896 bp Feature: domain Description: PHA02517 Location: 2120513-2120894 bp Feature: domain Description: PHA0251 7 Location: 21 2051 3-21 20894 bp Feature: gene Location: 2121001-2121351 bp Feature: domain Description: InsE Location: 2121010-2121298 bp Feature: domain Description: InsE Location: 21 21 01 0-21 21 298 bp Feature: gene Location: 2353352-2353654 bp Feature: domain Description: InsE Location: 2353391-2353640 bp Feature: domain Description: InsE Location: 2353391 -2353640 bp Feature: gene Location: 2353710-2354135 bp Feature: domain Description: PHA02517 Location: 2353734-2354070 bp Feature: domain Description: PHA0251 7 Location: 2353734-2354070 bp Feature: gene Location: 2354727-2356250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2355000-2355732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2355000-2355732 bp Feature: domain Description: GIIM Note: maturase Location: 2355807-2356005 bp Feature: domain Description: GIIM Note: maturase Location: 2355807-2356005 bp Feature: gene Location: 2356445-2356579 bp Feature: gene Location: 2356745-2357158 bp Feature: domain Description: COG2085 Location: 2356844-2356991 bp Feature: domain Description: COG2085 Location: 2356844-2356991 bp Feature: gene Location: 2849059-2849325 bp Feature: domain Description: Phage_integrase Location: 2849125-2849221 bp Feature: domain Description: Phage_integrase Location: 28491 25-2849221 bp Feature: gene Location: 2849408-2849878 bp Feature: gene Location: 2850225-2853434 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2850753-2851242 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2850753-2851 242 bp Feature: domain Description: nitrilase Location: 2852748-2853345 bp Feature: domain Description: nitrilase Location: 2852748-2853345 bp Feature: gene Location: 2853729-2854532 bp Feature: domain Description: AbiEi_3_N Location: 2853762-2854023 bp Feature: domain Description: AbiEi_3_N Location: 2853762-2854023 bp Feature: domain Description: AbiEi_3 Location: 2854035-2854491 bp Feature: domain Description: AbiEi_3 Location: 2854035-2854491 bp Feature: gene Location: 2854519-2855439 bp Feature: domain Description: AbiEii Location: 2854561-2855302 bp Feature: domain Description: AbiEii Location: 2854561 -2855302 bp Feature: gene Location: 4082996-4083316 bp Feature: gene Location: 4083282-4083728 bp Feature: domain Description: PHA02517 Location: 4083285-4083726 bp Feature: domain Description: PHA0251 7 Location: 4083285-4083726 bp Feature: gene Location: 4083845-4085368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4084118-4084850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40841 1 8-4084850 bp Feature: domain Description: GIIM Note: maturase Location: 4084925-4085123 bp Feature: domain Description: GIIM Note: maturase Location: 4084925-40851 23 bp Feature: gene Location: 4085322-4085747 bp Feature: gene Location: 4085960-4086439 bp Feature: domain Description: PHA02517 Location: 4086020-4086374 bp Feature: domain Description: PHA0251 7 Location: 4086020-4086374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dps (COG0783), RVT-GII, GIIM (pfam08388), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase ), AbiEii (pfam08843), PHA02517 (putative transposase OrfB; Reviewed), PRK09413 (IS2 repressor TnpA; Reviewed), YesM (COG2972)
InsE (COG2963), COG2085 (Predicted dinucleotide-binding enzyme ), Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459)

Seq: UGDY01000002.1 Escherichia coli strain NCTC4169 genome assembly, contig: ERS744792SCcontig000002, whole genome shotgun sequence (136470 bp)
Overview 1 RT 1: 37189-40538 bp 2 RT 2: 60593-64187 bp 3 RT 3: 77897-81599 bp Neighborhood of RT #1 [37189, 40603] PRK09413 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [60593, 64252] InsE Tra5 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [77897, 81652] PHA02517 RVT-GII GIIM PHA02517 autotrans_barl Feature: gene Location: 37189-37554 bp Feature: domain Description: PRK09413 Location: 37192-37552 bp Feature: domain Description: PRK09413 Location: 37192 -37552 bp Feature: gene Location: 37644-38090 bp Feature: domain Description: PHA02517 Location: 37647-38088 bp Feature: domain Description: PHA02 517 Location: 37647-38088 bp Feature: gene Location: 38207-39730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38480-39212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38480-392 12 bp Feature: domain Description: GIIM Note: maturase Location: 39287-39485 bp Feature: domain Description: GIIM Note: maturase Location: 392 87-39485 bp Feature: gene Location: 39684-40109 bp Feature: gene Location: 40322-40603 bp Feature: domain Description: PHA02517 Location: 40328-40538 bp Feature: domain Description: PHA02 517 Location: 4032 8-40538 bp Feature: gene Location: 60593-60892 bp Feature: domain Description: InsE Location: 60620-60887 bp Feature: domain Description: InsE Location: 6062 0-60887 bp Feature: gene Location: 60889-61536 bp Feature: domain Description: Tra5 Location: 61000-61510 bp Feature: domain Description: Tra5 Location: 61000-61510 bp Feature: gene Location: 61856-63379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62129-62861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 12 9-62 861 bp Feature: domain Description: GIIM Note: maturase Location: 62936-63134 bp Feature: domain Description: GIIM Note: maturase Location: 62 936-63134 bp Feature: gene Location: 63333-63758 bp Feature: gene Location: 63971-64252 bp Feature: domain Description: PHA02517 Location: 63977-64187 bp Feature: domain Description: PHA02 517 Location: 63977-64187 bp Feature: gene Location: 77897-78025 bp Feature: gene Location: 78073-78354 bp Feature: domain Description: PHA02517 Location: 78079-78289 bp Feature: domain Description: PHA02 517 Location: 78079-782 89 bp Feature: gene Location: 78946-80469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79219-79951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 792 19-79951 bp Feature: domain Description: GIIM Note: maturase Location: 80026-80224 bp Feature: domain Description: GIIM Note: maturase Location: 8002 6-802 2 4 bp Feature: gene Location: 80586-81032 bp Feature: domain Description: PHA02517 Location: 80589-81030 bp Feature: domain Description: PHA02 517 Location: 80589-81030 bp Feature: gene Location: 81035-81652 bp Feature: domain Description: autotrans_barl Location: 81158-81599 bp Feature: domain Description: autotrans_barl Location: 81158-81599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), Tra5 (COG2801), autotrans_barl (TIGR01414)

Seq: UGDY01000001.1 Escherichia coli strain NCTC4169 genome assembly, contig: ERS744792SCcontig000001, whole genome shotgun sequence (466169 bp)
Overview 1 RT 1: 243744-248220 bp Neighborhood of RT #1 [243744, 248285] PRK15069 PRK15135 RVT-GII GIIM PRK15437 Feature: gene Location: 243744-244460 bp Feature: domain Description: PRK15069 Location: 243747-244446 bp Feature: domain Description: PRK15069 Location: 243 747-244446 bp Feature: gene Location: 244457-245143 bp Feature: domain Description: PRK15135 Location: 244460-245141 bp Feature: domain Description: PRK1513 5 Location: 244460-245141 bp Feature: gene Location: 245370-246893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245643-246375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245643 -2463 75 bp Feature: domain Description: GIIM Note: maturase Location: 246450-246648 bp Feature: domain Description: GIIM Note: maturase Location: 246450-246648 bp Feature: gene Location: 246847-247272 bp Feature: gene Location: 247485-248285 bp Feature: domain Description: PRK15437 Location: 247488-248220 bp Feature: domain Description: PRK1543 7 Location: 247488-248220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15069 (histidine ABC transporter permease HisM), PRK15135 (histidine ABC transporter permease HisQ), RVT-GII, GIIM (pfam08388), PRK15437 (histidine ABC transporter substrate-binding protein HisJ; Provisional)