myRT

myRT report for GCA_900449565.1_39282_H01

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Seq: UGDZ01000006.1 Escherichia coli strain NCTC7921 genome assembly, contig: ERS744794SCcontig000006, whole genome shotgun sequence (3453304 bp)
Overview 1 RT 1: 2195581-2201612 bp 2 RT 2: 2496064-2499675 bp Neighborhood of RT #1 [2195581, 2201612] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Neighborhood of RT #2 [2496064, 2499740] PRK09413 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2195581-2196501 bp Feature: domain Description: AbiEii Location: 2195623-2196364 bp Feature: domain Description: AbiEii Location: 21 95623-21 96364 bp Feature: gene Location: 2196488-2197291 bp Feature: domain Description: AbiEi_3_N Location: 2196521-2196782 bp Feature: domain Description: AbiEi_3_N Location: 21 96521 -21 96782 bp Feature: domain Description: AbiEi_3 Location: 2196794-2197250 bp Feature: domain Description: AbiEi_3 Location: 21 96794-21 97250 bp Feature: gene Location: 2197586-2200795 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2198114-2198606 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 21 981 1 4-21 98606 bp Feature: domain Description: nitrilase Location: 2200109-2200706 bp Feature: domain Description: nitrilase Location: 22001 09-2200706 bp Feature: gene Location: 2200956-2201096 bp Feature: domain Description: Phage_ASH Location: 2200983-2201076 bp Feature: domain Description: Phage_ASH Location: 2200983-2201 076 bp Feature: gene Location: 2201142-2201612 bp Feature: gene Location: 2496064-2496429 bp Feature: domain Description: PRK09413 Location: 2496067-2496427 bp Feature: domain Description: PRK0941 3 Location: 2496067-2496427 bp Feature: gene Location: 2496691-2497050 bp Feature: domain Description: PHA02517 Location: 2496694-2497048 bp Feature: domain Description: PHA0251 7 Location: 2496694-2497048 bp Feature: gene Location: 2497167-2498690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2497440-2498172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2497440-24981 72 bp Feature: domain Description: GIIM Note: maturase Location: 2498247-2498445 bp Feature: domain Description: GIIM Note: maturase Location: 2498247-2498445 bp Feature: gene Location: 2498644-2499069 bp Feature: gene Location: 2499282-2499740 bp Feature: domain Description: PHA02517 Location: 2499390-2499675 bp Feature: domain Description: PHA0251 7 Location: 2499390-2499675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554), PRK09413 (IS2 repressor TnpA; Reviewed), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UGDZ01000005.1 Escherichia coli strain NCTC7921 genome assembly, contig: ERS744794SCcontig000005, whole genome shotgun sequence (125104 bp)
Overview 1 RT 1: 29324-32838 bp 2 RT 2: 46200-49988 bp Neighborhood of RT #1 [29324, 32903] autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [46200, 50026] InsE PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 29324-29941 bp Feature: domain Description: autotrans_barl Location: 29447-29888 bp Feature: domain Description: autotrans_barl Location: 2 9447-2 9888 bp Feature: gene Location: 29944-30390 bp Feature: domain Description: PHA02517 Location: 29947-30388 bp Feature: domain Description: PHA02 517 Location: 2 9947-30388 bp Feature: gene Location: 30507-32030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30780-31512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30780-31512 bp Feature: domain Description: GIIM Note: maturase Location: 31587-31785 bp Feature: domain Description: GIIM Note: maturase Location: 31587-31785 bp Feature: gene Location: 31984-32409 bp Feature: gene Location: 32622-32903 bp Feature: domain Description: PHA02517 Location: 32628-32838 bp Feature: domain Description: PHA02 517 Location: 32 62 8-32 838 bp Feature: gene Location: 46200-46526 bp Feature: domain Description: InsE Location: 46203-46524 bp Feature: domain Description: InsE Location: 462 03-4652 4 bp Feature: gene Location: 46526-47005 bp Feature: domain Description: PHA02517 Location: 46586-46940 bp Feature: domain Description: PHA02 517 Location: 46586-46940 bp Feature: gene Location: 47597-49120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47870-48602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47870-48602 bp Feature: domain Description: GIIM Note: maturase Location: 48677-48875 bp Feature: domain Description: GIIM Note: maturase Location: 48677-48875 bp Feature: gene Location: 49297-49593 bp Feature: domain Description: PHA02517 Location: 49300-49549 bp Feature: domain Description: PHA02 517 Location: 49300-49549 bp Feature: gene Location: 49622-50026 bp Feature: domain Description: InsE Location: 49652-49988 bp Feature: domain Description: InsE Location: 49652 -49988 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: UGDZ01000004.1 Escherichia coli strain NCTC7921 genome assembly, contig: ERS744794SCcontig000004, whole genome shotgun sequence (468100 bp)
Overview 1 RT 1: 388351-391265 bp Neighborhood of RT #1 [388351, 391330] RVT-GII GIIM PHA02517 Feature: gene Location: 388351-388494 bp Feature: gene Location: 388519-388722 bp Feature: gene Location: 388790-390313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389063-389795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 89063 -3 89795 bp Feature: domain Description: GIIM Note: maturase Location: 389870-390068 bp Feature: domain Description: GIIM Note: maturase Location: 3 89870-3 90068 bp Feature: gene Location: 390267-390692 bp Feature: gene Location: 390905-391330 bp Feature: domain Description: PHA02517 Location: 390929-391265 bp Feature: domain Description: PHA02517 Location: 3 90929-3 91265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: UGDZ01000001.1 Escherichia coli strain NCTC7921 genome assembly, contig: ERS744794SCcontig000001, whole genome shotgun sequence (593457 bp)
Overview 1 RT 1: 470547-474838 bp 2 RT 2: 499579-503861 bp Neighborhood of RT #1 [470547, 474838] YesM RVT-GII GIIM RVT-GII Neighborhood of RT #2 [499579, 503914] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 470547-471809 bp Feature: domain Description: YesM Location: 471060-471801 bp Feature: domain Description: YesM Location: 4 71060-4 71801 bp Feature: gene Location: 471839-472009 bp Feature: gene Location: 472359-472880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 472365-472647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 72365-4 7264 7 bp Feature: domain Description: GIIM Note: maturase Location: 472695-472875 bp Feature: domain Description: GIIM Note: maturase Location: 4 72695-4 72875 bp Feature: gene Location: 472908-473447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 473238-473316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 73238-4 73316 bp Feature: gene Location: 473478-473675 bp Feature: gene Location: 473933-474838 bp Feature: gene Location: 499579-500364 bp Feature: gene Location: 500491-500781 bp Feature: domain Description: PHA02517 Location: 500497-500716 bp Feature: domain Description: PHA02517 Location: 5004 97-500716 bp Feature: gene Location: 501373-502896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501646-502378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50164 6-502378 bp Feature: domain Description: GIIM Note: maturase Location: 502453-502651 bp Feature: domain Description: GIIM Note: maturase Location: 5024 53-502651 bp Feature: gene Location: 503073-503459 bp Feature: domain Description: PHA02517 Location: 503076-503457 bp Feature: domain Description: PHA02517 Location: 503076-5034 57 bp Feature: gene Location: 503564-503914 bp Feature: domain Description: InsE Location: 503573-503861 bp Feature: domain Description: InsE Location: 503573-503861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)