myRT

myRT report for GCA_900449985.1_40363_C01

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Seq: UGFA01000001.1 (274525 bp)
Overview 1 RT 1: 51373-58458 bp 2 RT 2: 80420-85900 bp 3 RT 3: 236303-239672 bp Neighborhood of RT #1 [51373, 58541] RVT_N RVT-GII GIIM HNHc Antirestrict DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE HTH_23 HTH_33 DDE_3 Neighborhood of RT #2 [80420, 85902] PRK09409 Tra5 RVT-GII RVT-GII GIIM ushA Neighborhood of RT #3 [236303, 239686] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 51373-51639 bp Feature: gene Location: 51875-52009 bp Feature: gene Location: 52166-53839 bp Feature: domain Description: RVT_N Location: 52214-52457 bp Feature: domain Description: RVT_N Location: 5221 4-52457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52502-53147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52502-531 47 bp Feature: domain Description: GIIM Note: maturase Location: 53201-53432 bp Feature: domain Description: GIIM Note: maturase Location: 53201 -53432 bp Feature: domain Description: HNHc Note: nucleases Location: 53633-53792 bp Feature: domain Description: HNHc Note: nucleases Location: 53633-53792 bp Feature: gene Location: 53872-54066 bp Feature: gene Location: 54151-54345 bp Feature: gene Location: 54861-55286 bp Feature: domain Description: Antirestrict Location: 54996-55284 bp Feature: domain Description: Antirestrict Location: 54996-55284 bp Feature: gene Location: 55305-55958 bp Feature: domain Description: DDE_Tnp_1 Location: 55311-55926 bp Feature: domain Description: DDE_Tnp_1 Location: 5531 1 -55926 bp Feature: gene Location: 55984-56187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56092-56182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56092-561 82 bp Feature: gene Location: 56248-56604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56257-56578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56257-56578 bp Feature: gene Location: 56698-57351 bp Feature: domain Description: HTH_23 Location: 56791-56878 bp Feature: domain Description: HTH_23 Location: 56791 -56878 bp Feature: domain Description: InsE Location: 57007-57202 bp Feature: domain Description: InsE Location: 57007-57202 bp Feature: gene Location: 57510-58541 bp Feature: domain Description: HTH_23 Location: 57588-57729 bp Feature: domain Description: HTH_23 Location: 57588-57729 bp Feature: domain Description: HTH_33 Location: 57834-57981 bp Feature: domain Description: HTH_33 Location: 57834-57981 bp Feature: domain Description: DDE_3 Location: 58038-58458 bp Feature: domain Description: DDE_3 Location: 58038-58458 bp Feature: gene Location: 80420-81325 bp Feature: domain Description: PRK09409 Location: 80423-81323 bp Feature: domain Description: PRK09409 Location: 80423-81 323 bp Feature: gene Location: 81589-81810 bp Feature: domain Description: Tra5 Location: 81601-81793 bp Feature: domain Description: Tra5 Location: 81 601 -81 793 bp Feature: gene Location: 81823-82950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82123-82780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821 23-82780 bp Feature: gene Location: 83249-83776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83255-83399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83255-83399 bp Feature: domain Description: GIIM Note: maturase Location: 83483-83699 bp Feature: domain Description: GIIM Note: maturase Location: 83483-83699 bp Feature: gene Location: 84129-84371 bp Feature: gene Location: 84283-85902 bp Feature: domain Description: ushA Location: 84298-85900 bp Feature: domain Description: ushA Location: 84298-85900 bp Feature: gene Location: 236303-236992 bp Feature: domain Description: PHA02517 Location: 236309-236990 bp Feature: domain Description: PHA0251 7 Location: 236309-236990 bp Feature: gene Location: 237086-237217 bp Feature: domain Description: DDE_Tnp_IS66 Location: 237098-237191 bp Feature: domain Description: DDE_Tnp_IS66 Location: 237098-2371 91 bp Feature: gene Location: 237695-238912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237881-238535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237881 -238535 bp Feature: domain Description: GIIM Note: maturase Location: 238613-238835 bp Feature: domain Description: GIIM Note: maturase Location: 23861 3-238835 bp Feature: gene Location: 239028-239174 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 239040-239151 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 239040-2391 51 bp Feature: gene Location: 239201-239686 bp Feature: domain Description: COG3547 Location: 239219-239672 bp Feature: domain Description: COG3547 Location: 23921 9-239672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Antirestrict (pfam03230), DDE_Tnp_1 (pfam01609), HTH_23 (pfam13384), InsE (COG2963), HTH_33 (pfam13592), DDE_3 (pfam13358)
PRK09409 (IS2 transposase TnpB; Reviewed), Tra5 (COG2801), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: UGFA01000002.1 (4564698 bp)
Overview 1 RT 1: 2159381-2165550 bp 2 RT 2: 2880488-2884368 bp Neighborhood of RT #1 [2159381, 2165594] DDE_Tnp_1 RVT-UG5 PRK09692 Neighborhood of RT #2 [2880488, 2884373] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 2159381-2160070 bp Feature: gene Location: 2160200-2161489 bp Feature: domain Description: DDE_Tnp_1 Location: 2160593-2161205 bp Feature: domain Description: DDE_Tnp_1 Location: 2 160593-2 1612 05 bp Feature: gene Location: 2161506-2163410 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2161512-2161671 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 161512 -2 161671 bp Feature: gene Location: 2163698-2164246 bp Feature: gene Location: 2164338-2165594 bp Feature: domain Description: PRK09692 Location: 2164347-2165550 bp Feature: domain Description: PRK09692 Location: 2 164347-2 165550 bp Feature: gene Location: 2880488-2881204 bp Feature: domain Description: rph Location: 2880491-2881199 bp Feature: domain Description: rph Location: 2 880491-2 881199 bp Feature: gene Location: 2881255-2881911 bp Feature: domain Description: pyrE Location: 2881273-2881906 bp Feature: domain Description: pyrE Location: 2 8812 73-2 881906 bp Feature: gene Location: 2882207-2883166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2882342-2882891 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 882 342 -2 882 891 bp Feature: gene Location: 2883212-2883808 bp Feature: domain Description: slmA Location: 2883218-2883794 bp Feature: domain Description: slmA Location: 2 8832 18-2 883794 bp Feature: gene Location: 2883915-2884373 bp Feature: domain Description: dut Location: 2883921-2884368 bp Feature: domain Description: dut Location: 2 88392 1-2 884368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-UG5, PRK09692 (Integrase; provisional), rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)