myRT

myRT report for GCA_900450175.1_40105_F01

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Seq: UGFN01000002.1 (288620 bp)
Overview 1 RT 1: 26650-29001 bp 2 RT 2: 32622-36544 bp 3 RT 3: 61415-66895 bp 4 RT 4: 211549-214876 bp Neighborhood of RT #1 [26650, 29001] TnpB_IS66 HTH_23 InsE RVT-GII GIIM HNHc Neighborhood of RT #2 [32622, 36627] DDE_Tnp_1 DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE HTH_23 HTH_33 DDE_3 Neighborhood of RT #3 [61415, 66897] PRK09409 Tra5 RVT-GII RVT-GII GIIM ushA Neighborhood of RT #4 [211549, 214890] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 26650-26997 bp Feature: domain Description: TnpB_IS66 Location: 26677-26968 bp Feature: domain Description: TnpB_IS66 Location: 26677-26968 bp Feature: gene Location: 26997-27638 bp Feature: domain Description: HTH_23 Location: 27048-27147 bp Feature: domain Description: HTH_23 Location: 27048-271 47 bp Feature: domain Description: InsE Location: 27270-27612 bp Feature: domain Description: InsE Location: 27270-2761 2 bp Feature: gene Location: 27734-28495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27743-27803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27743-27803 bp Feature: domain Description: GIIM Note: maturase Location: 27857-28088 bp Feature: domain Description: GIIM Note: maturase Location: 27857-28088 bp Feature: domain Description: HNHc Note: nucleases Location: 28289-28448 bp Feature: domain Description: HNHc Note: nucleases Location: 28289-28448 bp Feature: gene Location: 28528-28722 bp Feature: gene Location: 28807-29001 bp Feature: gene Location: 32622-33059 bp Feature: domain Description: DDE_Tnp_1 Location: 32664-32775 bp Feature: domain Description: DDE_Tnp_1 Location: 32664-32775 bp Feature: gene Location: 33262-34044 bp Feature: domain Description: DDE_Tnp_1 Location: 33268-33976 bp Feature: domain Description: DDE_Tnp_1 Location: 33268-33976 bp Feature: gene Location: 34070-34273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34178-34268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341 78-34268 bp Feature: gene Location: 34334-34690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34343-34664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34343-34664 bp Feature: gene Location: 34784-35437 bp Feature: domain Description: HTH_23 Location: 34877-34964 bp Feature: domain Description: HTH_23 Location: 34877-34964 bp Feature: domain Description: InsE Location: 35093-35288 bp Feature: domain Description: InsE Location: 35093-35288 bp Feature: gene Location: 35596-36627 bp Feature: domain Description: HTH_23 Location: 35674-35815 bp Feature: domain Description: HTH_23 Location: 35674-3581 5 bp Feature: domain Description: HTH_33 Location: 35920-36067 bp Feature: domain Description: HTH_33 Location: 35920-36067 bp Feature: domain Description: DDE_3 Location: 36124-36544 bp Feature: domain Description: DDE_3 Location: 361 24-36544 bp Feature: gene Location: 61415-62320 bp Feature: domain Description: PRK09409 Location: 61418-62318 bp Feature: domain Description: PRK09409 Location: 61 41 8-6231 8 bp Feature: gene Location: 62584-62805 bp Feature: domain Description: Tra5 Location: 62596-62788 bp Feature: domain Description: Tra5 Location: 62596-62788 bp Feature: gene Location: 62818-63945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63118-63775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 631 1 8-63775 bp Feature: gene Location: 64244-64771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64250-64394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64250-64394 bp Feature: domain Description: GIIM Note: maturase Location: 64478-64694 bp Feature: domain Description: GIIM Note: maturase Location: 64478-64694 bp Feature: gene Location: 65124-65366 bp Feature: gene Location: 65278-66897 bp Feature: domain Description: ushA Location: 65293-66895 bp Feature: domain Description: ushA Location: 65293-66895 bp Feature: gene Location: 211549-212196 bp Feature: domain Description: PHA02517 Location: 211552-212194 bp Feature: domain Description: PHA0251 7 Location: 21 1 552-21 21 94 bp Feature: gene Location: 212290-212421 bp Feature: domain Description: DDE_Tnp_IS66 Location: 212302-212395 bp Feature: domain Description: DDE_Tnp_IS66 Location: 21 2302-21 2395 bp Feature: gene Location: 212899-214116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213085-213739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 3085-21 3739 bp Feature: domain Description: GIIM Note: maturase Location: 213823-214039 bp Feature: domain Description: GIIM Note: maturase Location: 21 3823-21 4039 bp Feature: gene Location: 214232-214378 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 214244-214355 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 4244-21 4355 bp Feature: gene Location: 214405-214890 bp Feature: domain Description: COG3547 Location: 214423-214876 bp Feature: domain Description: COG3547 Location: 21 4423-21 4876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), HTH_23 (pfam13384), InsE (COG2963), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DDE_Tnp_1 (pfam01609), HTH_33 (pfam13592), DDE_3 (pfam13358), PRK09409 (IS2 transposase TnpB; Reviewed)
Tra5 (COG2801), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )