myRT

myRT report for GCA_900451505.1_49923_E01

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Seq: UASM01000005.1 (50551 bp)
Overview 1 RT 1: 71-3317 bp 2 RT 2: 33928-38370 bp Neighborhood of RT #1 [71, 3343] umuC PRK10276 RVT-GII RVT-GII InsA Neighborhood of RT #2 [33928, 38372] umuC PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 71-562 bp Feature: domain Description: umuC Location: 74-476 bp Feature: domain Description: umuC Location: 74-476 bp Feature: gene Location: 562-1269 bp Feature: domain Description: PRK10276 Location: 1084-1252 bp Feature: domain Description: PRK1 0276 Location: 1 084-1 252 bp Feature: gene Location: 1400-2119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1808-2030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 808-2030 bp Feature: gene Location: 2016-2771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2034-2328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2034-2328 bp Feature: gene Location: 2808-2966 bp Feature: gene Location: 3044-3343 bp Feature: domain Description: InsA Location: 3047-3317 bp Feature: domain Description: InsA Location: 3047-331 7 bp Feature: gene Location: 33928-35199 bp Feature: domain Description: umuC Location: 33931-35191 bp Feature: domain Description: umuC Location: 33931 -351 91 bp Feature: gene Location: 35199-35882 bp Feature: domain Description: PRK10276 Location: 35502-35865 bp Feature: domain Description: PRK1 0276 Location: 35502-35865 bp Feature: gene Location: 36036-37523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36441-37131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36441 -371 31 bp Feature: gene Location: 37675-37950 bp Feature: domain Description: InsA Location: 37678-37942 bp Feature: domain Description: InsA Location: 37678-37942 bp Feature: gene Location: 37869-38372 bp Feature: domain Description: DDE_Tnp_IS1 Location: 37980-38370 bp Feature: domain Description: DDE_Tnp_IS1 Location: 37980-38370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)

Seq: UASM01000052.1 (224382 bp)
Overview 1 RT 1: 211095-215698 bp Neighborhood of RT #1 [211095, 215698] KOG0143 PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 211095-211577 bp Feature: domain Description: KOG0143 Location: 211104-211497 bp Feature: domain Description: KOG0143 Location: 2 11104-2 11497 bp Feature: gene Location: 212439-213941 bp Feature: domain Description: PRK13889 Location: 212442-213021 bp Feature: domain Description: PRK13889 Location: 2 12 442 -2 1302 1 bp Feature: gene Location: 214018-215118 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 214159-214711 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 14159-2 14711 bp Feature: gene Location: 215111-215392 bp Feature: domain Description: HTH_XRE Location: 215126-215291 bp Feature: domain Description: HTH_XRE Location: 2 1512 6-2 152 91 bp Feature: gene Location: 215483-215698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0143 (KOG0143, Iron/ascorbate family oxidoreductases ), PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: UASM01000002.1 (182494 bp)
Overview 1 RT 1: 61669-64915 bp Neighborhood of RT #1 [61669, 64929] RVT-GII PRK10276 Feature: gene Location: 61669-61884 bp Feature: gene Location: 62151-62381 bp Feature: gene Location: 62615-64102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63020-63710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 020-63 710 bp Feature: gene Location: 64108-64275 bp Feature: gene Location: 64504-64929 bp Feature: domain Description: PRK10276 Location: 64507-64915 bp Feature: domain Description: PRK10276 Location: 64507-64915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: UASM01000026.1 (42056 bp)
Overview 1 RT 1: 35122-42053 bp Neighborhood of RT #1 [35122, 42055] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 35122-35850 bp Feature: domain Description: FimC Location: 35170-35833 bp Feature: domain Description: FimC Location: 35170-35833 bp Feature: gene Location: 35882-38491 bp Feature: domain Description: FimD Location: 35939-38480 bp Feature: domain Description: FimD Location: 35939-384 80 bp Feature: gene Location: 38491-40569 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 38899-39343 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 38899-3934 3 bp Feature: gene Location: 40626-41066 bp Feature: domain Description: Integrase_1 Location: 40632-40848 bp Feature: domain Description: Integrase_1 Location: 4 0632-4 084 8 bp Feature: gene Location: 41327-42055 bp Feature: domain Description: INT_P4_C Location: 41495-42053 bp Feature: domain Description: INT_P4 _C Location: 4 14 95-4 2053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)