myRT

myRT report for GCA_900451555.1_45665_C01

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Seq: UGKK01000003.1 (5153298 bp)
Overview 1 RT 1: 869892-878786 bp 2 RT 2: 1729872-1734743 bp 3 RT 3: 3148493-3153274 bp 4 RT 4: 3365164-3370173 bp Neighborhood of RT #1 [869892, 878839] PRK05433 RVT-GII RVT-GII SGNH_hydrolase_peri1 Neighborhood of RT #2 [1729872, 1734757] dacD RVT-GII PRK10016 YccC Neighborhood of RT #3 [3148493, 3153279] TfoX_N TfoX_C RVT-GII sula PRK10808 Neighborhood of RT #4 [3365164, 3370173] UvrB RVT-GII Feature: gene Location: 869892-871691 bp Feature: domain Description: PRK05433 Location: 869895-871680 bp Feature: domain Description: PRK05433 Location: 869895-871 680 bp Feature: gene Location: 872204-872635 bp Feature: gene Location: 872521-874005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872923-873613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 872923-87361 3 bp Feature: gene Location: 874059-874292 bp Feature: gene Location: 874430-875914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 874832-875522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 874832-875522 bp Feature: gene Location: 875968-876201 bp Feature: gene Location: 876335-878839 bp Feature: domain Description: SGNH_hydrolase_peri1 Location: 878354-878786 bp Feature: domain Description: SGNH_hydrolase_peri1 Location: 878354-878786 bp Feature: gene Location: 1729872-1731041 bp Feature: domain Description: dacD Location: 1729881-1731036 bp Feature: domain Description: dacD Location: 1 729881 -1 731 036 bp Feature: gene Location: 1731274-1731507 bp Feature: gene Location: 1731561-1733045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1731963-1732653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 731 963-1 732653 bp Feature: gene Location: 1733127-1733483 bp Feature: domain Description: PRK10016 Location: 1733130-1733478 bp Feature: domain Description: PRK1 001 6 Location: 1 7331 30-1 733478 bp Feature: gene Location: 1733684-1734757 bp Feature: domain Description: YccC Location: 1733705-1734743 bp Feature: domain Description: YccC Location: 1 733705-1 734743 bp Feature: gene Location: 3148493-3149110 bp Feature: domain Description: TfoX_N Location: 3148562-3148829 bp Feature: domain Description: TfoX_N Location: 31 48562-31 48829 bp Feature: domain Description: TfoX_C Location: 3148865-3149096 bp Feature: domain Description: TfoX_C Location: 31 48865-31 49096 bp Feature: gene Location: 3149497-3149730 bp Feature: gene Location: 3149784-3151268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3150186-3150876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 501 86-31 50876 bp Feature: gene Location: 3151347-3151856 bp Feature: domain Description: sula Location: 3151353-3151854 bp Feature: domain Description: sula Location: 31 51 353-31 51 854 bp Feature: gene Location: 3152209-3153279 bp Feature: domain Description: PRK10808 Location: 3152212-3153274 bp Feature: domain Description: PRK1 0808 Location: 31 5221 2-31 53274 bp Feature: gene Location: 3365164-3367185 bp Feature: domain Description: UvrB Location: 3365170-3367171 bp Feature: domain Description: UvrB Location: 33651 70-33671 71 bp Feature: gene Location: 3367359-3367592 bp Feature: gene Location: 3367646-3369130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3368048-3368738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3368048-3368738 bp Feature: gene Location: 3369506-3369718 bp Feature: gene Location: 3369874-3370173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05433 (GTP-binding protein LepA; Provisional), RVT-GII, SGNH_hydrolase_peri1 (cd01825), dacD (PRK11397), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), TfoX_N (pfam04993), TfoX_C (pfam04994), sula (TIGR00623), PRK10808 (outer membrane protein A; Reviewed)
UvrB (pfam12344)

Seq: UGKK01000001.1 (208812 bp)
Overview 1 RT 1: 18008-23360 bp 2 RT 2: 29599-33859 bp 3 RT 3: 118087-120222 bp 4 RT 4: 189606-194028 bp Neighborhood of RT #1 [18008, 23497] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Neighborhood of RT #2 [29599, 33885] DNA_pol3_theta RVT_N RVT-GII GIIM HNHc PRK09010 Neighborhood of RT #3 [118087, 120356] RVT-GII group_II_RT_mat Neighborhood of RT #4 [189606, 194042] RVT-GII Cloacin E2R135 Cytotoxic Cloacin_immun Feature: gene Location: 18008-19279 bp Feature: domain Description: umuC Location: 18011-19271 bp Feature: domain Description: umuC Location: 18011-192 71 bp Feature: gene Location: 19279-19986 bp Feature: domain Description: PRK10276 Location: 19603-19969 bp Feature: domain Description: PRK102 76 Location: 19603-19969 bp Feature: gene Location: 20116-21603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20521-21211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 052 1-2 12 11 bp Feature: gene Location: 21852-22823 bp Feature: domain Description: StbA Location: 21855-22800 bp Feature: domain Description: StbA Location: 2 1855-2 2 800 bp Feature: gene Location: 22826-23497 bp Feature: domain Description: Plasmid_stab_B Location: 22841-23048 bp Feature: domain Description: Plasmid_stab_B Location: 2 2 841-2 3048 bp Feature: domain Description: Plasmid_stab_B Location: 23153-23360 bp Feature: domain Description: Plasmid_stab_B Location: 2 3153-2 3360 bp Feature: gene Location: 29599-29853 bp Feature: domain Description: DNA_pol3_theta Location: 29608-29812 bp Feature: domain Description: DNA_pol3_theta Location: 2 9608-2 9812 bp Feature: gene Location: 29888-30205 bp Feature: gene Location: 30469-32136 bp Feature: domain Description: RVT_N Location: 30517-30754 bp Feature: domain Description: RVT_N Location: 30517-30754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30805-31447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30805-31447 bp Feature: domain Description: GIIM Note: maturase Location: 31498-31732 bp Feature: domain Description: GIIM Note: maturase Location: 31498-31732 bp Feature: domain Description: HNHc Note: nucleases Location: 31942-32101 bp Feature: domain Description: HNHc Note: nucleases Location: 31942 -32 101 bp Feature: gene Location: 32255-32551 bp Feature: gene Location: 32884-33885 bp Feature: domain Description: PRK09010 Location: 33346-33859 bp Feature: domain Description: PRK09010 Location: 33346-33859 bp Feature: gene Location: 118087-118356 bp Feature: gene Location: 118609-118956 bp Feature: gene Location: 118891-119418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119296-119386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1192 96-119386 bp Feature: gene Location: 119599-119865 bp Feature: gene Location: 119880-120356 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 119937-120222 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 119937-12 02 2 2 bp Feature: gene Location: 189606-189851 bp Feature: gene Location: 190211-190444 bp Feature: gene Location: 190495-191982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190900-191590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190900-191590 bp Feature: gene Location: 192087-193775 bp Feature: domain Description: Cloacin Location: 192216-193044 bp Feature: domain Description: Cloacin Location: 192 2 16-193044 bp Feature: domain Description: E2R135 Location: 193053-193458 bp Feature: domain Description: E2 R135 Location: 193053-193458 bp Feature: domain Description: Cytotoxic Location: 193512-193764 bp Feature: domain Description: Cytotoxic Location: 193512 -193764 bp Feature: gene Location: 193785-194042 bp Feature: domain Description: Cloacin_immun Location: 193791-194028 bp Feature: domain Description: Cloacin_immun Location: 193791-19402 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784), DNA_pol3_theta (pfam06440), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), PRK09010 (single-stranded DNA-binding protein; Provisional)
group_II_RT_mat (TIGR04416), Cloacin (pfam03515), E2R135 (pfam11570), Cytotoxic (pfam09000), Cloacin_immun (pfam03513)