myRT

myRT report for GCA_900452855.1_51765_A01

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Seq: UGPJ01000001.1 (3192191 bp)
Overview 1 RT 1: 7288-13120 bp 2 RT 2: 1085319-1089117 bp 3 RT 3: 1264612-1268386 bp 4 RT 4: 1985374-1989474 bp 5 RT 5: 2639548-2646994 bp 6 RT 6: 3187047-3189097 bp Neighborhood of RT #1 [7288, 13120] AAA_16 COG3547 RVT_N RVT-GII GIIM Neighborhood of RT #2 [1085319, 1089140] zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-GII GIIM TnpB_IS66 Neighborhood of RT #3 [1264612, 1268409] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 RVT-GII GIIM TnpB_IS66 Neighborhood of RT #4 [1985374, 1989488] TnpB_IS66 RVT-GII GIIM TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #5 [2639548, 2647017] HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-UG8 RVT-UG3 SLATT_5 Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 Neighborhood of RT #6 [3187047, 3189097] RVT_N RVT-GII GIIM Feature: gene Location: 7288-8940 bp Feature: domain Description: AAA_16 Location: 7834-8278 bp Feature: domain Description: AAA_1 6 Location: 7834-8278 bp Feature: gene Location: 9726-10766 bp Feature: domain Description: COG3547 Location: 9747-10716 bp Feature: domain Description: COG3547 Location: 9747-1 071 6 bp Feature: gene Location: 11073-12545 bp Feature: domain Description: RVT_N Location: 11121-11364 bp Feature: domain Description: RVT_N Location: 1 1 1 21 -1 1 364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11409-12036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 409-1 2036 bp Feature: domain Description: GIIM Note: maturase Location: 12099-12321 bp Feature: domain Description: GIIM Note: maturase Location: 1 2099-1 2321 bp Feature: gene Location: 12564-12800 bp Feature: gene Location: 12989-13120 bp Feature: gene Location: 1085319-1086848 bp Feature: domain Description: zf-IS66 Location: 1085652-1085778 bp Feature: domain Description: zf-IS66 Location: 1 085652-1 085778 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1085841-1086687 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 085841 -1 086687 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1086708-1086822 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 086708-1 086822 bp Feature: gene Location: 1086935-1087135 bp Feature: domain Description: TnpB_IS66 Location: 1086938-1087103 bp Feature: domain Description: TnpB_IS66 Location: 1 086938-1 0871 03 bp Feature: gene Location: 1087169-1088434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1087373-1088030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 087373-1 088030 bp Feature: domain Description: GIIM Note: maturase Location: 1088108-1088330 bp Feature: domain Description: GIIM Note: maturase Location: 1 0881 08-1 088330 bp Feature: gene Location: 1088485-1088757 bp Feature: gene Location: 1088946-1089140 bp Feature: domain Description: TnpB_IS66 Location: 1088970-1089117 bp Feature: domain Description: TnpB_IS66 Location: 1 088970-1 0891 1 7 bp Feature: gene Location: 1264612-1266138 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1264726-1264927 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 264726-1 264927 bp Feature: domain Description: zf-IS66 Location: 1264954-1265086 bp Feature: domain Description: zf-IS66 Location: 1 264954-1 265086 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1265146-1265995 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 2651 46-1 265995 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1266016-1266124 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 26601 6-1 2661 24 bp Feature: gene Location: 1266198-1266398 bp Feature: domain Description: TnpB_IS66 Location: 1266201-1266354 bp Feature: domain Description: TnpB_IS66 Location: 1 266201 -1 266354 bp Feature: gene Location: 1266432-1267697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1266636-1267293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 266636-1 267293 bp Feature: domain Description: GIIM Note: maturase Location: 1267371-1267593 bp Feature: domain Description: GIIM Note: maturase Location: 1 267371 -1 267593 bp Feature: gene Location: 1267748-1268020 bp Feature: gene Location: 1268209-1268409 bp Feature: domain Description: TnpB_IS66 Location: 1268236-1268386 bp Feature: domain Description: TnpB_IS66 Location: 1 268236-1 268386 bp Feature: gene Location: 1985374-1985691 bp Feature: gene Location: 1985688-1985888 bp Feature: domain Description: TnpB_IS66 Location: 1985715-1985865 bp Feature: domain Description: TnpB_IS66 Location: 1 98571 5-1 985865 bp Feature: gene Location: 1986400-1987665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1986604-1987261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 986604-1 987261 bp Feature: domain Description: GIIM Note: maturase Location: 1987339-1987561 bp Feature: domain Description: GIIM Note: maturase Location: 1 987339-1 987561 bp Feature: gene Location: 1987699-1987899 bp Feature: domain Description: TnpB_IS66 Location: 1987702-1987855 bp Feature: domain Description: TnpB_IS66 Location: 1 987702-1 987855 bp Feature: gene Location: 1987959-1989488 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1988073-1988280 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 988073-1 988280 bp Feature: domain Description: zf-IS66 Location: 1988304-1988436 bp Feature: domain Description: zf-IS66 Location: 1 988304-1 988436 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1988496-1989345 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 988496-1 989345 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1989366-1989474 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 989366-1 989474 bp Feature: gene Location: 2639548-2640786 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 2639812-2639959 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 263981 2-2639959 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2640016-2640727 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 264001 6-2640727 bp Feature: gene Location: 2640892-2641032 bp Feature: gene Location: 2641153-2643078 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2641651-2642098 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2641 651 -2642098 bp Feature: gene Location: 2643071-2644249 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2643359-2643809 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2643359-2643809 bp Feature: gene Location: 2644479-2644832 bp Feature: domain Description: SLATT_5 Location: 2644494-2644794 bp Feature: domain Description: SLATT_5 Location: 2644494-2644794 bp Feature: gene Location: 2645629-2647017 bp Feature: domain Description: Tnp_DNA_bind Location: 2645656-2645824 bp Feature: domain Description: Tnp_DNA_bind Location: 2645656-2645824 bp Feature: domain Description: DDE_Tnp_1 Location: 2646292-2646709 bp Feature: domain Description: DDE_Tnp_1 Location: 2646292-2646709 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2646736-2646994 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2646736-2646994 bp Feature: gene Location: 3187047-3187244 bp Feature: domain Description: RVT_N Location: 3187095-3187188 bp Feature: domain Description: RVT_N Location: 31 87095-31 871 88 bp Feature: gene Location: 3187395-3187595 bp Feature: gene Location: 3187766-3188560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3187784-3188012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 87784-31 8801 2 bp Feature: domain Description: GIIM Note: maturase Location: 3188075-3188297 bp Feature: domain Description: GIIM Note: maturase Location: 31 88075-31 88297 bp Feature: gene Location: 3188541-3188777 bp Feature: gene Location: 3188966-3189097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_16 (pfam13191), COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007)
HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), RVT-UG8, RVT-UG3, SLATT_5 (pfam18160), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281)