myRT

myRT report for GCA_900454235.1_34576_A02

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Seq: UGSA01000002.1 (1953062 bp)
Overview 1 RT 1: 776330-780401 bp Neighborhood of RT #1 [776330, 780466] DapA RVT-GII GIIM organ_hyd_perox MarR Feature: gene Location: 776330-777229 bp Ori: SUB44121.1 Gene: dapA_5 Feature: domain Description: DapA Location: 776336-777215 bp Feature: domain Description: DapA Location: 776336-77721 5 bp Feature: gene Location: 777231-777485 bp Feature: gene Location: 777536-778969 bp Ori: SUB44123.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777905-778523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777905-778523 bp Feature: domain Description: GIIM Note: maturase Location: 778571-778796 bp Feature: domain Description: GIIM Note: maturase Location: 778571 -778796 bp Feature: gene Location: 779441-779863 bp Ori: SUB44124.1 Gene: ohrB Feature: domain Description: organ_hyd_perox Location: 779453-779858 bp Feature: domain Description: organ_hyd_perox Location: 779453-779858 bp Feature: gene Location: 780008-780466 bp Ori: SUB44125.1 Gene: ohrR Feature: domain Description: MarR Location: 780083-780401 bp Feature: domain Description: MarR Location: 780083-780401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DapA (COG0329), RVT-GII, GIIM (pfam08388), organ_hyd_perox (TIGR03561), MarR (pfam01047)

Seq: UGSA01000003.1 (271086 bp)
Overview 1 RT 1: 73677-79415 bp 2 RT 2: 119798-125099 bp Neighborhood of RT #1 [73677, 79489] InsE RVT-GII KOG4768 COG3547 excise Neighborhood of RT #2 [119798, 125134] PRK06148 COG3547 RVT-GII GIIM HTH_21 InsE Feature: gene Location: 73677-74051 bp Ori: SUB55836.1 Feature: domain Description: InsE Location: 73740-74016 bp Feature: domain Description: InsE Location: 73740-74016 bp Feature: gene Location: 74274-74519 bp Feature: gene Location: 75137-76663 bp Ori: SUB55838.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75410-76142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75410-76142 bp Feature: domain Description: KOG4768 Location: 76301-76418 bp Feature: domain Description: KOG4768 Location: 76301-76418 bp Feature: gene Location: 77178-78806 bp Ori: SUB55839.1 Feature: domain Description: COG3547 Location: 77589-78732 bp Feature: domain Description: COG3547 Location: 77589-78732 bp Feature: gene Location: 79160-79489 bp Ori: SUB55840.1 Feature: domain Description: excise Location: 79277-79415 bp Feature: domain Description: excise Location: 792 77-79415 bp Feature: gene Location: 119798-120148 bp Ori: SUB55891.1 Feature: domain Description: PRK06148 Location: 119801-120014 bp Feature: domain Description: PRK06148 Location: 119801-12 0014 bp Feature: gene Location: 120527-121564 bp Ori: SUB55892.1 Feature: domain Description: COG3547 Location: 120551-121511 bp Feature: domain Description: COG3547 Location: 12 0551-12 1511 bp Feature: gene Location: 122278-123807 bp Ori: SUB55893.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122551-123286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 551-12 32 86 bp Feature: domain Description: GIIM Note: maturase Location: 123358-123586 bp Feature: domain Description: GIIM Note: maturase Location: 12 3358-12 3586 bp Feature: gene Location: 124425-124826 bp Ori: SUB55894.1 Feature: domain Description: HTH_21 Location: 124530-124689 bp Feature: domain Description: HTH_2 1 Location: 12 4530-12 4689 bp Feature: gene Location: 124823-125134 bp Ori: SUB55895.1 Feature: domain Description: InsE Location: 124826-125099 bp Feature: domain Description: InsE Location: 12 482 6-12 5099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), COG3547 (Transposase ), excise (TIGR01764), PRK06148 (hypothetical protein; Provisional), GIIM (pfam08388), HTH_21 (pfam13276)

Seq: UGSA01000001.1 (2887299 bp)
Overview 1 RT 1: 1152823-1161850 bp 2 RT 2: 1836360-1840714 bp 3 RT 3: 1873947-1879204 bp 4 RT 4: 2244320-2250633 bp 5 RT 5: 2409426-2414865 bp Neighborhood of RT #1 [1152823, 1161882] argS SPOR RVT-GII GIIM BglX ScpA Neighborhood of RT #2 [1836360, 1840714] DUF2165 RVT-GII GIIM COG2899 Neighborhood of RT #3 [1873947, 1879389] TetR_N TetR_C_22 PRK05764 RVT-GII GIIM MPP_GpdQ Neighborhood of RT #4 [2244320, 2250633] COG3448 SR_Res_par HTH_7 RVT-UG8 RVT-UG3 Neighborhood of RT #5 [2409426, 2414865] RVT-UG12 Feature: gene Location: 1152823-1154580 bp Ori: SUA62448.1 Gene: argS Feature: domain Description: argS Location: 1152838-1154575 bp Feature: domain Description: argS Location: 115283 8-1154575 bp Feature: gene Location: 1154892-1157873 bp Ori: SUA62451.1 Feature: domain Description: SPOR Location: 1157631-1157868 bp Feature: domain Description: SPOR Location: 115763 1-1157868 bp Feature: gene Location: 1158351-1159784 bp Ori: SUA62454.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1158720-1159338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1158720-11593 3 8 bp Feature: domain Description: GIIM Note: maturase Location: 1159386-1159611 bp Feature: domain Description: GIIM Note: maturase Location: 11593 86-1159611 bp Feature: gene Location: 1159938-1160957 bp Ori: SUA62457.1 Gene: nagZ Feature: domain Description: BglX Location: 1159944-1160841 bp Feature: domain Description: BglX Location: 1159944-1160841 bp Feature: gene Location: 1161004-1161882 bp Ori: SUA62460.1 Gene: scpA_1 Feature: domain Description: ScpA Location: 1161130-1161850 bp Feature: domain Description: ScpA Location: 116113 0-1161850 bp Feature: gene Location: 1836360-1836860 bp Ori: SUA64898.1 Feature: domain Description: DUF2165 Location: 1836375-1836837 bp Feature: domain Description: DUF2165 Location: 183 63 75-183 683 7 bp Feature: gene Location: 1836857-1837003 bp Feature: gene Location: 1837054-1838487 bp Ori: SUA64904.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1837423-1838041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 7423 -183 8041 bp Feature: domain Description: GIIM Note: maturase Location: 1838089-1838314 bp Feature: domain Description: GIIM Note: maturase Location: 183 8089-183 83 14 bp Feature: gene Location: 1838966-1840033 bp Ori: SUA64908.1 Feature: domain Description: COG2899 Location: 1838969-1839992 bp Feature: domain Description: COG2899 Location: 183 8969-183 9992 bp Feature: gene Location: 1840445-1840714 bp Feature: gene Location: 1873947-1874597 bp Ori: SUA65002.1 Gene: bm3R1 Feature: domain Description: TetR_N Location: 1874055-1874178 bp Feature: domain Description: TetR_N Location: 1874055-1874178 bp Feature: domain Description: TetR_C_22 Location: 1874268-1874583 bp Feature: domain Description: TetR_C_22 Location: 1874268-1874583 bp Feature: gene Location: 1874818-1876020 bp Ori: SUA65005.1 Feature: domain Description: PRK05764 Location: 1874827-1876012 bp Feature: domain Description: PRK05764 Location: 1874827-1876012 bp Feature: gene Location: 1876174-1877607 bp Ori: SUA65009.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1876543-1877161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1876543 -1877161 bp Feature: domain Description: GIIM Note: maturase Location: 1877209-1877434 bp Feature: domain Description: GIIM Note: maturase Location: 1877209-187743 4 bp Feature: gene Location: 1877959-1878183 bp Feature: gene Location: 1878544-1879389 bp Ori: SUA65015.1 Gene: cpdA_2 Feature: domain Description: MPP_GpdQ Location: 1878553-1879204 bp Feature: domain Description: MPP_GpdQ Location: 1878553 -1879204 bp Feature: gene Location: 2244320-2245069 bp Ori: SUA66209.1 Feature: domain Description: COG3448 Location: 2244821-2245028 bp Feature: domain Description: COG3 448 Location: 2244821-2245028 bp Feature: gene Location: 2245213-2245830 bp Ori: SUA66213.1 Gene: bin3_1 Feature: domain Description: SR_Res_par Location: 2245225-2245657 bp Feature: domain Description: SR_Res_par Location: 2245225-2245657 bp Feature: domain Description: HTH_7 Location: 2245693-2245798 bp Feature: domain Description: HTH_7 Location: 2245693 -2245798 bp Feature: gene Location: 2246172-2248193 bp Ori: SUA66217.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2246703-2247147 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2246703 -2247147 bp Feature: gene Location: 2248186-2249436 bp Ori: SUA66221.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2248468-2248954 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2248468-2248954 bp Feature: gene Location: 2249576-2249905 bp Feature: gene Location: 2249917-2250633 bp Feature: gene Location: 2409426-2409758 bp Feature: gene Location: 2409925-2410770 bp Feature: gene Location: 2411445-2413118 bp Ori: SUA66852.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2411823-2412261 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2411823 -2412261 bp Feature: gene Location: 2413366-2414241 bp Feature: gene Location: 2414578-2414865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT argS (TIGR00456), SPOR (pfam05036), RVT-GII, GIIM (pfam08388), BglX (COG1472), ScpA (COG1354), DUF2165 (pfam09933), COG2899 (Uncharacterized protein ), TetR_N (pfam00440), TetR_C_22 (pfam17928)
PRK05764 (aspartate aminotransferase; Provisional), MPP_GpdQ (cd07402), COG3448 (CBS-domain-containing membrane protein ), SR_Res_par (cd03767), HTH_7 (pfam02796), RVT-UG8, RVT-UG3, RVT-UG12