myRT

myRT report for GCA_900454345.1_51726_A01

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Seq: UGSF01000001.1 (2374739 bp)
Overview 1 RT 1: 333800-340825 bp 2 RT 2: 789753-794098 bp 3 RT 3: 1829398-1835023 bp 4 RT 4: 1907530-1911319 bp 5 RT 5: 2128191-2131666 bp 6 RT 6: 2242980-2247389 bp 7 RT 7: 2298641-2303414 bp 8 RT 8: 2316117-2321762 bp Neighborhood of RT #1 [333800, 340878] PP-binding IS5 RVT-GII GIIM RVT-GII GIIM HTH_Tnp_1 Neighborhood of RT #2 [789753, 794115] TPR_MLP1_2 RVT-GII GIIM PRK06602 KOG1687 Neighborhood of RT #3 [1829398, 1835046] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM RVT-GII TtdA FumA Neighborhood of RT #4 [1907530, 1911319] PRK10262 SmrA RVT-GII Neighborhood of RT #5 [2128191, 2131666] PdxA RVT-GII GIIM Neighborhood of RT #6 [2242980, 2247389] PRK11790 PRK03545 RVT-GII GIIM Neighborhood of RT #7 [2298641, 2303414] Hit trmE RVT-GII RVT-GII GIIM EmrE Neighborhood of RT #8 [2316117, 2321776] TonB_dep_Rec TP_methylase_like RVT-GII GIIM PRK01318 Feature: gene Location: 333800-334015 bp Feature: domain Description: PP-binding Location: 333812-334004 bp Feature: domain Description: PP-binding Location: 33381 2-334004 bp Feature: gene Location: 334275-334832 bp Feature: domain Description: IS5 Location: 334317-334800 bp Feature: domain Description: IS5 Location: 33431 7-334800 bp Feature: gene Location: 335439-336797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335736-336354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 335736-336354 bp Feature: domain Description: GIIM Note: maturase Location: 336408-336627 bp Feature: domain Description: GIIM Note: maturase Location: 336408-336627 bp Feature: gene Location: 337253-337483 bp Feature: gene Location: 337455-338168 bp Feature: gene Location: 338929-340287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339226-339844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 339226-339844 bp Feature: domain Description: GIIM Note: maturase Location: 339898-340117 bp Feature: domain Description: GIIM Note: maturase Location: 339898-3401 1 7 bp Feature: gene Location: 340381-340512 bp Feature: gene Location: 340612-340878 bp Feature: domain Description: HTH_Tnp_1 Location: 340618-340825 bp Feature: domain Description: HTH_Tnp_1 Location: 34061 8-340825 bp Feature: gene Location: 789753-789956 bp Feature: gene Location: 790116-790649 bp Feature: domain Description: TPR_MLP1_2 Location: 790449-790632 bp Feature: domain Description: TPR_MLP1 _2 Location: 790449-790632 bp Feature: gene Location: 791360-792718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791657-792275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 791 657-792275 bp Feature: domain Description: GIIM Note: maturase Location: 792329-792548 bp Feature: domain Description: GIIM Note: maturase Location: 792329-792548 bp Feature: gene Location: 793249-793608 bp Feature: domain Description: PRK06602 Location: 793255-793606 bp Feature: domain Description: PRK06602 Location: 793255-793606 bp Feature: gene Location: 793630-794115 bp Feature: domain Description: KOG1687 Location: 793654-794098 bp Feature: domain Description: KOG1 687 Location: 793654-794098 bp Feature: gene Location: 1829398-1829790 bp Feature: domain Description: TnpB_IS66 Location: 1829479-1829761 bp Feature: domain Description: TnpB_IS66 Location: 1 829479-1 829761 bp Feature: gene Location: 1829877-1831490 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1830066-1830291 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 830066-1 830291 bp Feature: domain Description: zf-IS66 Location: 1830312-1830438 bp Feature: domain Description: zf-IS66 Location: 1 83031 2-1 830438 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1830480-1831326 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 830480-1 831 326 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1831347-1831458 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 831 347-1 831 458 bp Feature: gene Location: 1831538-1831987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1831547-1831640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 831 547-1 831 640 bp Feature: domain Description: GIIM Note: maturase Location: 1831688-1831907 bp Feature: domain Description: GIIM Note: maturase Location: 1 831 688-1 831 907 bp Feature: gene Location: 1831997-1832806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1832294-1832801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 832294-1 832801 bp Feature: gene Location: 1832812-1833015 bp Feature: gene Location: 1833529-1835046 bp Feature: domain Description: TtdA Location: 1833538-1834417 bp Feature: domain Description: TtdA Location: 1 833538-1 83441 7 bp Feature: domain Description: FumA Location: 1834483-1835023 bp Feature: domain Description: FumA Location: 1 834483-1 835023 bp Feature: gene Location: 1907530-1908501 bp Feature: domain Description: PRK10262 Location: 1907542-1908490 bp Feature: domain Description: PRK1 0262 Location: 1 907542-1 908490 bp Feature: gene Location: 1908485-1909219 bp Feature: domain Description: SmrA Location: 1908623-1909214 bp Feature: domain Description: SmrA Location: 1 908623-1 90921 4 bp Feature: gene Location: 1909506-1910486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1909803-1910400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 909803-1 91 0400 bp Feature: gene Location: 1910492-1910695 bp Feature: gene Location: 1911032-1911319 bp Feature: gene Location: 2128191-2128406 bp Feature: gene Location: 2128718-2129755 bp Feature: domain Description: PdxA Location: 2128742-2129714 bp Feature: domain Description: PdxA Location: 21 28742-21 2971 4 bp Feature: gene Location: 2129894-2131252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2130191-2130809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 301 91 -21 30809 bp Feature: domain Description: GIIM Note: maturase Location: 2130863-2131082 bp Feature: domain Description: GIIM Note: maturase Location: 21 30863-21 31 082 bp Feature: gene Location: 2131258-2131461 bp Feature: gene Location: 2131463-2131666 bp Feature: gene Location: 2242980-2244212 bp Feature: domain Description: PRK11790 Location: 2242992-2244210 bp Feature: domain Description: PRK1 1 790 Location: 2242992-224421 0 bp Feature: gene Location: 2244323-2245498 bp Feature: domain Description: PRK03545 Location: 2244353-2245475 bp Feature: domain Description: PRK03545 Location: 2244353-2245475 bp Feature: gene Location: 2245617-2246975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2245914-2246532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224591 4-2246532 bp Feature: domain Description: GIIM Note: maturase Location: 2246586-2246805 bp Feature: domain Description: GIIM Note: maturase Location: 2246586-2246805 bp Feature: gene Location: 2246981-2247184 bp Feature: gene Location: 2247186-2247389 bp Feature: gene Location: 2298641-2299060 bp Feature: domain Description: Hit Location: 2298659-2299046 bp Feature: domain Description: Hit Location: 2298659-2299046 bp Feature: gene Location: 2299073-2300461 bp Feature: domain Description: trmE Location: 2299094-2300459 bp Feature: domain Description: trmE Location: 2299094-2300459 bp Feature: gene Location: 2301180-2301989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2301477-2301984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2301 477-2301 984 bp Feature: gene Location: 2301999-2302538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2302008-2302101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2302008-23021 01 bp Feature: domain Description: GIIM Note: maturase Location: 2302149-2302368 bp Feature: domain Description: GIIM Note: maturase Location: 23021 49-2302368 bp Feature: gene Location: 2302649-2302996 bp Feature: domain Description: EmrE Location: 2302670-2302976 bp Feature: domain Description: EmrE Location: 2302670-2302976 bp Feature: gene Location: 2303208-2303414 bp Feature: gene Location: 2316117-2317241 bp Feature: domain Description: TonB_dep_Rec Location: 2316156-2317236 bp Feature: domain Description: TonB_dep_Rec Location: 231 61 56-231 7236 bp Feature: gene Location: 2317261-2318091 bp Feature: domain Description: TP_methylase_like Location: 2317360-2318089 bp Feature: domain Description: TP_methylase_like Location: 231 7360-231 8089 bp Feature: gene Location: 2318123-2319400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2318420-2319038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 8420-231 9038 bp Feature: domain Description: GIIM Note: maturase Location: 2319092-2319311 bp Feature: domain Description: GIIM Note: maturase Location: 231 9092-231 931 1 bp Feature: gene Location: 2319406-2319609 bp Feature: gene Location: 2320115-2321776 bp Feature: domain Description: PRK01318 Location: 2320118-2321762 bp Feature: domain Description: PRK01 31 8 Location: 23201 1 8-2321 762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PP-binding (pfam00550), IS5 (COG3039), RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), TPR_MLP1_2 (pfam07926), PRK06602 (NADH:ubiquinone oxidoreductase subunit A; Validated), KOG1687 (KOG1687, NADH-ubiquinone oxidoreductase, NUFS7/PSST/20 kDa subunit ), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007)
zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TtdA (COG1951), FumA (COG1838), PRK10262 (thioredoxin reductase; Provisional), SmrA (COG2840), PdxA (pfam04166), PRK11790 (phosphoglycerate dehydrogenase), PRK03545 (putative arabinose transporter; Provisional)
Hit (COG0537), trmE (PRK05291), EmrE (pfam13536), TonB_dep_Rec (pfam00593), TP_methylase_like, PRK01318 (membrane protein insertase; Provisional)