myRT

myRT report for GCA_900454675.1_58225_B01

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Seq: UGTD01000001.1 (2422534 bp)
Overview 1 RT 1: 1927008-1932629 bp 2 RT 2: 2227860-2236669 bp Neighborhood of RT #1 [1927008, 1932919] RVT-Retrons Trypsin_2 DUF4357 SSL2 Neighborhood of RT #2 [2227860, 2236686] SmpB PRK09692 RVT-UG2 COG0610 RMtype1_S_Sau13435ORF2165P_TRD2-CR2_like RMtype1_S_EcoUTORF5051P-TRD2-CR2_like Feature: gene Location: 1927008-1927490 bp Feature: gene Location: 1927744-1928454 bp Feature: gene Location: 1929150-1930853 bp Ori: SUB66874.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1929348-1929954 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 929348-1 929954 bp Feature: domain Description: Trypsin_2 Location: 1930338-1930758 bp Feature: domain Description: Trypsin_2 Location: 1 930338-1 930758 bp Feature: gene Location: 1931112-1931540 bp Ori: SUB66875.1 Feature: domain Description: DUF4357 Location: 1931349-1931514 bp Feature: domain Description: DUF4357 Location: 1 931 349-1 931 51 4 bp Feature: gene Location: 1931537-1932919 bp Ori: SUB66876.1 Feature: domain Description: SSL2 Location: 1931543-1932629 bp Feature: domain Description: SSL2 Location: 1 931 543-1 932629 bp Feature: gene Location: 2227860-2228342 bp Ori: SUB67149.1 Gene: smpB Feature: domain Description: SmpB Location: 2227890-2228331 bp Feature: domain Description: SmpB Location: 2227890-2228331 bp Feature: gene Location: 2229186-2229920 bp Ori: SUB67150.1 Gene: intA_2 Feature: domain Description: PRK09692 Location: 2229195-2229879 bp Feature: domain Description: PRK09692 Location: 22291 95-2229879 bp Feature: gene Location: 2230704-2232359 bp Ori: SUB67151.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2231079-2232060 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2231 079-2232060 bp Feature: gene Location: 2232425-2235487 bp Ori: SUB67152.1 Gene: hsdR Feature: domain Description: COG0610 Location: 2232434-2234615 bp Feature: domain Description: COG061 0 Location: 2232434-223461 5 bp Feature: gene Location: 2235496-2236686 bp Ori: SUB67153.1 Gene: hsdS Feature: domain Description: RMtype1_S_Sau13435ORF2165P_TRD2-CR2_like Location: 2235772-2235997 bp Feature: domain Description: RMtype1 _S_Sau1 3435ORF21 65P_TRD2-CR2_like Location: 2235772-2235997 bp Feature: domain Description: RMtype1_S_EcoUTORF5051P-TRD2-CR2_like Location: 2236117-2236669 bp Feature: domain Description: RMtype1 _S_EcoUTORF5051 P-TRD2-CR2_like Location: 22361 1 7-2236669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), DUF4357 (pfam14267), SSL2 (COG1061), SmpB (pfam01668), PRK09692 (Integrase; provisional), RVT-UG2, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RMtype1_S_Sau13435ORF2165P_TRD2-CR2_like (cd17521), RMtype1_S_EcoUTORF5051P-TRD2-CR2_like (cd17524)

Seq: UGTD01000002.1 (1349049 bp)
Overview 1 RT 1: 88449-94881 bp 2 RT 2: 977184-981643 bp Neighborhood of RT #1 [88449, 94892] RVT-UG2 PRK05367 PRK01202 Neighborhood of RT #2 [977184, 981645] RVT-GII GIIM SodC Feature: gene Location: 88449-88715 bp Feature: gene Location: 88978-89316 bp Feature: gene Location: 89795-91078 bp Ori: SUB90056.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 89996-90779 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 89996-90779 bp Feature: gene Location: 91515-94388 bp Ori: SUB90057.1 Gene: gcvP Feature: domain Description: PRK05367 Location: 91539-94383 bp Feature: domain Description: PRK05367 Location: 91539-94383 bp Feature: gene Location: 94509-94892 bp Ori: SUB90058.1 Gene: gcvH_2 Feature: domain Description: PRK01202 Location: 94515-94881 bp Feature: domain Description: PRK012 02 Location: 94515-94881 bp Feature: gene Location: 977184-977741 bp Feature: gene Location: 977820-978371 bp Feature: gene Location: 978638-979477 bp Ori: SUB90845.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978641-979028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978641-97902 8 bp Feature: domain Description: GIIM Note: maturase Location: 979070-979295 bp Feature: domain Description: GIIM Note: maturase Location: 979070-9792 95 bp Feature: gene Location: 980635-980802 bp Feature: gene Location: 981130-981645 bp Ori: SUB90847.1 Gene: sodC Feature: domain Description: SodC Location: 981208-981643 bp Feature: domain Description: SodC Location: 9812 08-981643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, PRK05367 (aminomethyl-transferring glycine dehydrogenase), PRK01202 (glycine cleavage system protein GcvH), RVT-GII, GIIM (pfam08388), SodC (COG2032)

Seq: UGTD01000004.1 (283316 bp)
Overview 1 RT 1: 159076-165709 bp Neighborhood of RT #1 [159076, 165777] 2-Hacid_dh_1 YjaG RVT-GII RVT-GII GIIM BrnQ TlyC Feature: gene Location: 159076-159987 bp Ori: SUB91570.1 Gene: ghrA Feature: domain Description: 2-Hacid_dh_1 Location: 159166-159985 bp Feature: domain Description: 2-Hacid_dh_1 Location: 159166-159985 bp Feature: gene Location: 160022-160636 bp Ori: SUB91571.1 Feature: domain Description: YjaG Location: 160052-160631 bp Feature: domain Description: YjaG Location: 160052-16063 1 bp Feature: gene Location: 161439-161999 bp Ori: SUB91572.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161652-161994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161652-161994 bp Feature: gene Location: 162084-162722 bp Ori: SUB91573.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162087-162267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162087-162267 bp Feature: domain Description: GIIM Note: maturase Location: 162315-162540 bp Feature: domain Description: GIIM Note: maturase Location: 1623 15-162540 bp Feature: gene Location: 163291-164613 bp Ori: SUB91574.1 Gene: brnQ_4 Feature: domain Description: BrnQ Location: 163297-164551 bp Feature: domain Description: BrnQ Location: 163 297-164551 bp Feature: gene Location: 164722-165777 bp Ori: SUB91575.1 Gene: yfjD_2 Feature: domain Description: TlyC Location: 164728-165709 bp Feature: domain Description: TlyC Location: 164728-165709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2-Hacid_dh_1 (cd05300), YjaG (COG3068), RVT-GII, GIIM (pfam08388), BrnQ (COG1114), TlyC (COG1253)