myRT

myRT report for GCA_900455145.1_43251_E01

Download annotations/find similar RTs

Seq: UATW01000012.1 Pseudomonas aeruginosa strain NCTC11452 genome assembly, contig: ERS1018589SCcontig000012, whole genome shotgun sequence (381704 bp)
Overview 1 RT 1: 163969-169539 bp Neighborhood of RT #1 [163969, 169559] HAD-SF-IIA-hyp4 Imp-YgjV RVT-GII GIIM NhaP OpuBB Feature: gene Location: 163969-164868 bp Feature: domain Description: HAD-SF-IIA-hyp4 Location: 164041-164746 bp Feature: domain Description: HAD-SF-IIA-hyp4 Location: 1 64041 -1 64746 bp Feature: gene Location: 164898-165143 bp Feature: domain Description: Imp-YgjV Location: 164907-165117 bp Feature: domain Description: Imp-YgjV Location: 1 64907-1 651 1 7 bp Feature: gene Location: 165221-166642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165578-166193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 65578-1 661 93 bp Feature: domain Description: GIIM Note: maturase Location: 166247-166475 bp Feature: domain Description: GIIM Note: maturase Location: 1 66247-1 66475 bp Feature: gene Location: 167121-168554 bp Feature: domain Description: NhaP Location: 167316-168519 bp Feature: domain Description: NhaP Location: 1 6731 6-1 6851 9 bp Feature: gene Location: 168837-169559 bp Feature: domain Description: OpuBB Location: 168936-169539 bp Feature: domain Description: OpuBB Location: 1 68936-1 69539 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAD-SF-IIA-hyp4 (TIGR01459), Imp-YgjV (pfam10688), RVT-GII, GIIM (pfam08388), NhaP (COG0025), OpuBB (COG1174)

Seq: UATW01000001.1 Pseudomonas aeruginosa strain NCTC11452 genome assembly, contig: ERS1018589SCcontig000001, whole genome shotgun sequence (3365932 bp)
Overview 1 RT 1: 1045786-1055580 bp 2 RT 2: 1249556-1257045 bp 3 RT 3: 2336792-2342616 bp 4 RT 4: 2868132-2874091 bp 5 RT 5: 3312524-3318860 bp 6 RT 6: 3330683-3335418 bp Neighborhood of RT #1 [1045786, 1055630] WHy PhnA RVT-GII GIIM RVT-GII GIIM RVT-GII GIIM GABAperm ALDH_F6_MMSDH Neighborhood of RT #2 [1249556, 1257086] PRK10683 PRK10592 RVT-GII GIIM PvdQ Arabinose_bd AraC Neighborhood of RT #3 [2336792, 2342663] Toluene_X RVT-GII GIIM BtuE MFS_YcxA_like Neighborhood of RT #4 [2868132, 2874168] GT4-like DegV RVT-GII GIIM OYE_like_5_FMN AcrR Neighborhood of RT #5 [3312524, 3318880] degP_htrA_DO RVT-GII GIIM PRK05387 hisD Neighborhood of RT #6 [3330683, 3335423] RapZ PtsH RVT-GII GIIM ZupT SodA Feature: gene Location: 1045786-1046286 bp Feature: domain Description: WHy Location: 1045891-1046194 bp Feature: domain Description: WHy Location: 1045891-1046194 bp Feature: gene Location: 1046359-1046700 bp Feature: domain Description: PhnA Location: 1046368-1046695 bp Feature: domain Description: PhnA Location: 1046368-1046695 bp Feature: gene Location: 1047273-1048598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047534-1048149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047534-1048149 bp Feature: domain Description: GIIM Note: maturase Location: 1048203-1048431 bp Feature: domain Description: GIIM Note: maturase Location: 10482 03-1048431 bp Feature: gene Location: 1049192-1050517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1049453-1050068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1049453-1050068 bp Feature: domain Description: GIIM Note: maturase Location: 1050122-1050350 bp Feature: domain Description: GIIM Note: maturase Location: 105012 2 -1050350 bp Feature: gene Location: 1051111-1052436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1051372-1051987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1051372 -1051987 bp Feature: domain Description: GIIM Note: maturase Location: 1052041-1052269 bp Feature: domain Description: GIIM Note: maturase Location: 1052 041-1052 2 69 bp Feature: gene Location: 1052541-1053968 bp Feature: domain Description: GABAperm Location: 1052547-1053924 bp Feature: domain Description: GABAperm Location: 1052 547-105392 4 bp Feature: gene Location: 1054137-1055630 bp Feature: domain Description: ALDH_F6_MMSDH Location: 1054152-1055580 bp Feature: domain Description: ALDH_F6_MMSDH Location: 1054152 -1055580 bp Feature: gene Location: 1249556-1250467 bp Feature: domain Description: PRK10683 Location: 1249583-1250459 bp Feature: domain Description: PRK10683 Location: 12 49583-12 50459 bp Feature: gene Location: 1250550-1251419 bp Feature: domain Description: PRK10592 Location: 1250565-1251372 bp Feature: domain Description: PRK10592 Location: 12 50565-12 51372 bp Feature: gene Location: 1251991-1253316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1252252-1252867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 52 2 52 -12 52 867 bp Feature: domain Description: GIIM Note: maturase Location: 1252921-1253149 bp Feature: domain Description: GIIM Note: maturase Location: 12 52 92 1-12 53149 bp Feature: gene Location: 1253536-1255923 bp Feature: domain Description: PvdQ Location: 1253539-1255891 bp Feature: domain Description: PvdQ Location: 12 53539-12 55891 bp Feature: gene Location: 1256034-1257086 bp Feature: domain Description: Arabinose_bd Location: 1256145-1256667 bp Feature: domain Description: Arabinose_bd Location: 12 56145-12 56667 bp Feature: domain Description: AraC Location: 1256703-1257045 bp Feature: domain Description: AraC Location: 12 56703-12 57045 bp Feature: gene Location: 2336792-2337286 bp Feature: gene Location: 2337196-2338767 bp Feature: domain Description: Toluene_X Location: 2337541-2338765 bp Feature: domain Description: Toluene_X Location: 2 337541-2 338765 bp Feature: gene Location: 2338848-2340173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2339109-2339724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 339109-2 33972 4 bp Feature: domain Description: GIIM Note: maturase Location: 2339778-2340006 bp Feature: domain Description: GIIM Note: maturase Location: 2 339778-2 340006 bp Feature: gene Location: 2340745-2341299 bp Feature: domain Description: BtuE Location: 2340835-2341285 bp Feature: domain Description: BtuE Location: 2 340835-2 3412 85 bp Feature: gene Location: 2341464-2342663 bp Feature: domain Description: MFS_YcxA_like Location: 2341482-2342616 bp Feature: domain Description: MFS_YcxA_like Location: 2 341482 -2 342 616 bp Feature: gene Location: 2868132-2869352 bp Feature: domain Description: GT4-like Location: 2868153-2869251 bp Feature: domain Description: GT4-like Location: 2 868153-2 8692 51 bp Feature: gene Location: 2869356-2870315 bp Feature: domain Description: DegV Location: 2869359-2870298 bp Feature: domain Description: DegV Location: 2 869359-2 8702 98 bp Feature: gene Location: 2870501-2871826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2870762-2871377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 870762 -2 871377 bp Feature: domain Description: GIIM Note: maturase Location: 2871431-2871659 bp Feature: domain Description: GIIM Note: maturase Location: 2 871431-2 871659 bp Feature: gene Location: 2872425-2873537 bp Feature: domain Description: OYE_like_5_FMN Location: 2872449-2873532 bp Feature: domain Description: OYE_like_5_FMN Location: 2 872 449-2 873532 bp Feature: gene Location: 2873578-2874168 bp Feature: domain Description: AcrR Location: 2873599-2874091 bp Feature: domain Description: AcrR Location: 2 873599-2 874091 bp Feature: gene Location: 3312524-3313294 bp Feature: gene Location: 3313369-3314538 bp Feature: domain Description: degP_htrA_DO Location: 3313531-3314491 bp Feature: domain Description: degP_htrA_DO Location: 3313531-3314491 bp Feature: gene Location: 3314616-3315941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3314877-3315492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3314877-3315492 bp Feature: domain Description: GIIM Note: maturase Location: 3315546-3315774 bp Feature: domain Description: GIIM Note: maturase Location: 3315546-3315774 bp Feature: gene Location: 3316500-3317555 bp Feature: domain Description: PRK05387 Location: 3316503-3317544 bp Feature: domain Description: PRK05387 Location: 3316503-3317544 bp Feature: gene Location: 3317558-3318880 bp Feature: domain Description: hisD Location: 3317612-3318860 bp Feature: domain Description: hisD Location: 3317612 -3318860 bp Feature: gene Location: 3330683-3331543 bp Feature: domain Description: RapZ Location: 3330686-3331538 bp Feature: domain Description: RapZ Location: 3330686-3331538 bp Feature: gene Location: 3331573-3331845 bp Feature: domain Description: PtsH Location: 3331579-3331837 bp Feature: domain Description: PtsH Location: 3331579-3331837 bp Feature: gene Location: 3331930-3333255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3332191-3332806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3332 191-3332 806 bp Feature: domain Description: GIIM Note: maturase Location: 3332860-3333088 bp Feature: domain Description: GIIM Note: maturase Location: 3332 860-3333088 bp Feature: gene Location: 3333861-3334763 bp Feature: domain Description: ZupT Location: 3333999-3334761 bp Feature: domain Description: ZupT Location: 3333999-3334761 bp Feature: gene Location: 3334812-3335423 bp Feature: domain Description: SodA Location: 3334815-3335418 bp Feature: domain Description: SodA Location: 3334815-3335418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WHy (smart00769), PhnA (pfam03831), RVT-GII, GIIM (pfam08388), GABAperm (TIGR01773), ALDH_F6_MMSDH (cd07085), PRK10683 (putrescine transporter subunit: membrane component of ABC superfamily; Provisional), PRK10592 (putrescine transporter subunit: membrane component of ABC superfamily; Provisional), PvdQ (COG2366), Arabinose_bd (pfam12625)
AraC (COG2207), Toluene_X (pfam03349), BtuE (COG0386), MFS_YcxA_like (cd17355), GT4-like (cd05844), DegV (TIGR00762), OYE_like_5_FMN (cd04747), AcrR (COG1309), degP_htrA_DO (TIGR02037), PRK05387 (histidinol-phosphate aminotransferase; Provisional)
hisD (TIGR00069), RapZ (COG1660), PtsH (COG1925), ZupT (COG0428), SodA (COG0605)

Seq: UATW01000008.1 Pseudomonas aeruginosa strain NCTC11452 genome assembly, contig: ERS1018589SCcontig000008, whole genome shotgun sequence (202368 bp)
Overview 1 RT 1: 150350-155668 bp Neighborhood of RT #1 [150350, 155685] LasI PBP2_PheC RVT-GII GIIM 2A78 RarD Feature: gene Location: 150350-150955 bp Feature: domain Description: LasI Location: 150353-150950 bp Feature: domain Description: LasI Location: 1503 53 -150950 bp Feature: gene Location: 151110-151916 bp Feature: domain Description: PBP2_PheC Location: 151194-151884 bp Feature: domain Description: PBP2_PheC Location: 151194-151884 bp Feature: gene Location: 152485-153810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152746-153361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152746-153 3 61 bp Feature: domain Description: GIIM Note: maturase Location: 153415-153643 bp Feature: domain Description: GIIM Note: maturase Location: 153 415-153 643 bp Feature: gene Location: 153929-154789 bp Feature: domain Description: 2A78 Location: 153962-154751 bp Feature: domain Description: 2A78 Location: 153 962-154751 bp Feature: gene Location: 154786-155685 bp Feature: domain Description: RarD Location: 154798-155668 bp Feature: domain Description: RarD Location: 154798-155668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LasI (COG3916), PBP2_PheC (cd01069), RVT-GII, GIIM (pfam08388), 2A78 (TIGR00950), RarD (COG2962)

Seq: UATW01000009.1 Pseudomonas aeruginosa strain NCTC11452 genome assembly, contig: ERS1018589SCcontig000009, whole genome shotgun sequence (266858 bp)
Overview 1 RT 1: 233411-238528 bp Neighborhood of RT #1 [233411, 238551] VOC_like RVT-GII GIIM CptA TPR Feature: gene Location: 233411-233836 bp Feature: domain Description: VOC_like Location: 233435-233792 bp Feature: domain Description: VOC_like Location: 2334 35-233792 bp Feature: gene Location: 233993-234472 bp Feature: gene Location: 234312-235733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234669-235284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234 669-235284 bp Feature: domain Description: GIIM Note: maturase Location: 235338-235566 bp Feature: domain Description: GIIM Note: maturase Location: 235338-235566 bp Feature: gene Location: 235811-237613 bp Feature: domain Description: CptA Location: 235853-237515 bp Feature: domain Description: CptA Location: 235853-237515 bp Feature: gene Location: 237736-238551 bp Feature: domain Description: TPR Location: 237766-238528 bp Feature: domain Description: TPR Location: 237766-238528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VOC_like (cd16355), RVT-GII, GIIM (pfam08388), CptA (NF012179), TPR (smart00028)

Seq: UATW01000010.1 Pseudomonas aeruginosa strain NCTC11452 genome assembly, contig: ERS1018589SCcontig000010, whole genome shotgun sequence (858291 bp)
Overview 1 RT 1: 243851-248363 bp 2 RT 2: 556444-563199 bp Neighborhood of RT #1 [243851, 248383] Inhibitor_I78 RVT-GII GIIM PRK15433 Neighborhood of RT #2 [556444, 563222] PRK08275 MngR RVT-GII GIIM Chi1 COG3979 PA2301 Feature: gene Location: 243851-244084 bp Feature: gene Location: 244176-244502 bp Feature: domain Description: Inhibitor_I78 Location: 244308-244500 bp Feature: domain Description: Inhibitor_I78 Location: 244308-2445 00 bp Feature: gene Location: 245076-246401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245337-245952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245 337-245 95 2 bp Feature: domain Description: GIIM Note: maturase Location: 246006-246234 bp Feature: domain Description: GIIM Note: maturase Location: 246006-246234 bp Feature: gene Location: 246488-246727 bp Feature: gene Location: 247070-248383 bp Feature: domain Description: PRK15433 Location: 247079-248363 bp Feature: domain Description: PRK15 433 Location: 247079-248363 bp Feature: gene Location: 556444-558168 bp Feature: domain Description: PRK08275 Location: 556447-558100 bp Feature: domain Description: PRK08275 Location: 5 5 6447-5 5 8100 bp Feature: gene Location: 558165-558914 bp Feature: domain Description: MngR Location: 558189-558885 bp Feature: domain Description: MngR Location: 5 5 8189-5 5 8885 bp Feature: gene Location: 559123-560385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559321-559936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 9321-5 5 9936 bp Feature: domain Description: GIIM Note: maturase Location: 559990-560218 bp Feature: domain Description: GIIM Note: maturase Location: 5 5 9990-5 60218 bp Feature: gene Location: 561009-562460 bp Feature: domain Description: Chi1 Location: 561012-562014 bp Feature: domain Description: Chi1 Location: 5 61012-5 62014 bp Feature: domain Description: COG3979 Location: 562029-562455 bp Feature: domain Description: COG3979 Location: 5 62029-5 6245 5 bp Feature: gene Location: 562680-563222 bp Feature: domain Description: PA2301 Location: 562791-563199 bp Feature: domain Description: PA2301 Location: 5 62791-5 63199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inhibitor_I78 (pfam11720), RVT-GII, GIIM (pfam08388), PRK15433 (branched-chain amino acid transporter carrier protein BrnQ), PRK08275 (putative oxidoreductase; Provisional), MngR (COG2188), Chi1 (COG3469), COG3979 (Chitodextrinase ), PA2301 (cd04939)