myRT

myRT report for GCA_900455205.1_43222_H01

Download annotations/find similar RTs

Seq: UGUG01000006.1 Pseudomonas aeruginosa strain NCTC11449 genome assembly, contig: ERS1018586SCcontig000006, whole genome shotgun sequence (4197032 bp)
Overview 1 RT 1: 2548427-2559097 bp Neighborhood of RT #1 [2548427, 2559162] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 2548427-2550280 bp Feature: domain Description: PRK05658 Location: 2548439-2550278 bp Feature: domain Description: PRK05658 Location: 2548439-2550278 bp Feature: gene Location: 2550387-2554124 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2550495-2551152 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2550495-2551 1 52 bp Feature: domain Description: PRK09776 Location: 2551365-2551836 bp Feature: domain Description: PRK09776 Location: 2551 365-2551 836 bp Feature: domain Description: PAS Location: 2551881-2552418 bp Feature: domain Description: PAS Location: 2551 881 -255241 8 bp Feature: domain Description: PRK10060 Location: 2552427-2554074 bp Feature: domain Description: PRK1 0060 Location: 2552427-2554074 bp Feature: gene Location: 2555205-2556890 bp Feature: RT Description: RVT_N Location: 2555262-2555502 bp Feature: RT Description: RVT_N Location: 2555262-2555502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2555550-2556186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2555550-25561 86 bp Feature: domain Description: GIIM Note: maturase Location: 2556240-2556471 bp Feature: domain Description: GIIM Note: maturase Location: 2556240-2556471 bp Feature: domain Description: HNH Note: nucleases Location: 2556723-2556861 bp Feature: domain Description: HNH Note: nucleases Location: 2556723-2556861 bp Feature: gene Location: 2557613-2558734 bp Feature: domain Description: COG3177 Location: 2557631-2558723 bp Feature: domain Description: COG31 77 Location: 2557631 -2558723 bp Feature: gene Location: 2558827-2559162 bp Feature: domain Description: NERD Location: 2558926-2559097 bp Feature: domain Description: NERD Location: 2558926-2559097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )
NERD (pfam08378)