myRT

myRT report for GCA_900455325.1_43295_F02

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Seq: UATV01000016.1 Pseudomonas aeruginosa strain NCTC12449 genome assembly, contig: ERS1018593SCcontig000016, whole genome shotgun sequence (1009332 bp)
Overview 1 RT 1: 389981-398825 bp 2 RT 2: 415089-425389 bp Neighborhood of RT #1 [389981, 398833] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [415089, 425400] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 389981-390655 bp Feature: domain Description: NTP_transferase_like_1 Location: 389987-390626 bp Feature: domain Description: NTP_transferase_like_1 Location: 389987-390626 bp Feature: gene Location: 390652-391668 bp Feature: domain Description: COG3178 Location: 390655-391654 bp Feature: domain Description: COG31 78 Location: 390655-391 654 bp Feature: gene Location: 392941-394653 bp Feature: RT Description: RVT_N Location: 392998-393241 bp Feature: RT Description: RVT_N Location: 392998-393241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393286-393922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393286-393922 bp Feature: domain Description: YkfC Location: 394129-394282 bp Feature: domain Description: YkfC Location: 3941 29-394282 bp Feature: domain Description: HNH Note: nucleases Location: 394459-394597 bp Feature: domain Description: HNH Note: nucleases Location: 394459-394597 bp Feature: gene Location: 394786-397560 bp Feature: domain Description: LptD Location: 394981-397546 bp Feature: domain Description: LptD Location: 394981 -397546 bp Feature: gene Location: 397619-398833 bp Feature: domain Description: PRK10770 Location: 397631-398825 bp Feature: domain Description: PRK1 0770 Location: 397631 -398825 bp Feature: gene Location: 415089-416942 bp Feature: domain Description: PRK05658 Location: 415101-416940 bp Feature: domain Description: PRK05658 Location: 41 51 01 -41 6940 bp Feature: gene Location: 417049-420786 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 417157-417814 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 41 71 57-41 781 4 bp Feature: domain Description: PRK09776 Location: 418027-418498 bp Feature: domain Description: PRK09776 Location: 41 8027-41 8498 bp Feature: domain Description: PAS Location: 418543-419080 bp Feature: domain Description: PAS Location: 41 8543-41 9080 bp Feature: domain Description: PRK10060 Location: 419089-420736 bp Feature: domain Description: PRK1 0060 Location: 41 9089-420736 bp Feature: gene Location: 421867-423552 bp Feature: RT Description: RVT_N Location: 421924-422164 bp Feature: RT Description: RVT_N Location: 421 924-4221 64 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422212-422848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42221 2-422848 bp Feature: domain Description: GIIM Note: maturase Location: 422902-423133 bp Feature: domain Description: GIIM Note: maturase Location: 422902-4231 33 bp Feature: domain Description: HNH Note: nucleases Location: 423385-423523 bp Feature: domain Description: HNH Note: nucleases Location: 423385-423523 bp Feature: gene Location: 423880-424017 bp Feature: gene Location: 424279-425400 bp Feature: domain Description: COG3177 Location: 424297-425389 bp Feature: domain Description: COG31 77 Location: 424297-425389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )