myRT

myRT report for GCA_900455365.1_45889_H01

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Seq: UAUC01000003.1 Pseudomonas aeruginosa strain NCTC13717 genome assembly, contig: ERS1117683SCcontig000003, whole genome shotgun sequence (929051 bp)
Overview 1 RT 1: 424892-435189 bp Neighborhood of RT #1 [424892, 435200] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 424892-426745 bp Feature: domain Description: PRK05658 Location: 424904-426743 bp Feature: domain Description: PRK05658 Location: 424904-426743 bp Feature: gene Location: 426852-430589 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 426960-427617 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 426960-42761 7 bp Feature: domain Description: PRK09776 Location: 427830-428301 bp Feature: domain Description: PRK09776 Location: 427830-428301 bp Feature: domain Description: PAS Location: 428373-428883 bp Feature: domain Description: PAS Location: 428373-428883 bp Feature: domain Description: PRK10060 Location: 428892-430539 bp Feature: domain Description: PRK1 0060 Location: 428892-430539 bp Feature: gene Location: 431670-433355 bp Feature: RT Description: RVT_N Location: 431727-431967 bp Feature: RT Description: RVT_N Location: 431 727-431 967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432015-432651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43201 5-432651 bp Feature: domain Description: GIIM Note: maturase Location: 432705-432936 bp Feature: domain Description: GIIM Note: maturase Location: 432705-432936 bp Feature: domain Description: HNH Note: nucleases Location: 433188-433326 bp Feature: domain Description: HNH Note: nucleases Location: 4331 88-433326 bp Feature: gene Location: 433683-433820 bp Feature: gene Location: 434079-435200 bp Feature: domain Description: COG3177 Location: 434097-435189 bp Feature: domain Description: COG31 77 Location: 434097-4351 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )