myRT

myRT report for GCA_900455395.1_43251_H01

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Seq: UATX01000002.1 Pseudomonas aeruginosa strain NCTC12448 genome assembly, contig: ERS1018592SCcontig000002, whole genome shotgun sequence (1622349 bp)
Overview 1 RT 1: 663794-674527 bp Neighborhood of RT #1 [663794, 674529] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 663794-664129 bp Feature: domain Description: NERD Location: 663893-664064 bp Feature: domain Description: NERD Location: 663893-664064 bp Feature: gene Location: 664222-665343 bp Feature: domain Description: COG3177 Location: 664240-665332 bp Feature: domain Description: COG31 77 Location: 664240-665332 bp Feature: gene Location: 666066-667751 bp Feature: RT Description: RVT_N Location: 666123-666363 bp Feature: RT Description: RVT_N Location: 6661 23-666363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 666411-667047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66641 1 -667047 bp Feature: domain Description: GIIM Note: maturase Location: 667101-667332 bp Feature: domain Description: GIIM Note: maturase Location: 6671 01 -667332 bp Feature: domain Description: HNH Note: nucleases Location: 667584-667722 bp Feature: domain Description: HNH Note: nucleases Location: 667584-667722 bp Feature: gene Location: 668832-672569 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 668940-669597 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 668940-669597 bp Feature: domain Description: PRK09776 Location: 669810-670281 bp Feature: domain Description: PRK09776 Location: 66981 0-670281 bp Feature: domain Description: PAS Location: 670326-670863 bp Feature: domain Description: PAS Location: 670326-670863 bp Feature: domain Description: PRK10060 Location: 670872-672519 bp Feature: domain Description: PRK1 0060 Location: 670872-67251 9 bp Feature: gene Location: 672676-674529 bp Feature: domain Description: PRK05658 Location: 672688-674527 bp Feature: domain Description: PRK05658 Location: 672688-674527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)