myRT

myRT report for GCA_900455415.1_45532_B02

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Seq: UGUM01000004.1 Pseudomonas aeruginosa strain NCTC13719 genome assembly, contig: ERS1106926SCcontig000004, whole genome shotgun sequence (6840717 bp)
Overview 1 RT 1: 374012-384320 bp 2 RT 2: 400578-409428 bp 3 RT 3: 6813888-6824150 bp Neighborhood of RT #1 [374012, 384322] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [400578, 409457] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [6813888, 6824150] TIGR03623 IS5 RVT_N RVT-GII GIIM RVT-GII GIIM IS5 Feature: gene Location: 374012-375133 bp Feature: domain Description: COG3177 Location: 374030-375122 bp Feature: domain Description: COG31 77 Location: 374030-3751 22 bp Feature: gene Location: 375395-375556 bp Feature: gene Location: 375859-377544 bp Feature: RT Description: RVT_N Location: 375916-376156 bp Feature: RT Description: RVT_N Location: 37591 6-3761 56 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376204-376840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376204-376840 bp Feature: domain Description: GIIM Note: maturase Location: 376894-377125 bp Feature: domain Description: GIIM Note: maturase Location: 376894-3771 25 bp Feature: domain Description: HNH Note: nucleases Location: 377377-377515 bp Feature: domain Description: HNH Note: nucleases Location: 377377-37751 5 bp Feature: gene Location: 378625-382362 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 378733-379390 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 378733-379390 bp Feature: domain Description: PRK09776 Location: 379603-380074 bp Feature: domain Description: PRK09776 Location: 379603-380074 bp Feature: domain Description: PAS Location: 380119-380656 bp Feature: domain Description: PAS Location: 3801 1 9-380656 bp Feature: domain Description: PRK10060 Location: 380665-382312 bp Feature: domain Description: PRK1 0060 Location: 380665-38231 2 bp Feature: gene Location: 382469-384322 bp Feature: domain Description: PRK05658 Location: 382481-384320 bp Feature: domain Description: PRK05658 Location: 382481 -384320 bp Feature: gene Location: 400578-401792 bp Feature: domain Description: PRK10770 Location: 400590-401784 bp Feature: domain Description: PRK1 0770 Location: 400590-401 784 bp Feature: gene Location: 401851-404652 bp Feature: domain Description: LptD Location: 402046-404638 bp Feature: domain Description: LptD Location: 402046-404638 bp Feature: gene Location: 404785-406497 bp Feature: RT Description: RVT_N Location: 404842-405085 bp Feature: RT Description: RVT_N Location: 404842-405085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405130-405766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4051 30-405766 bp Feature: domain Description: YkfC Location: 405973-406126 bp Feature: domain Description: YkfC Location: 405973-4061 26 bp Feature: domain Description: HNH Note: nucleases Location: 406303-406441 bp Feature: domain Description: HNH Note: nucleases Location: 406303-406441 bp Feature: gene Location: 407770-408786 bp Feature: domain Description: COG3178 Location: 407773-408772 bp Feature: domain Description: COG31 78 Location: 407773-408772 bp Feature: gene Location: 408783-409457 bp Feature: domain Description: NTP_transferase_like_1 Location: 408789-409428 bp Feature: domain Description: NTP_transferase_like_1 Location: 408789-409428 bp Feature: gene Location: 6813888-6816407 bp Feature: domain Description: TIGR03623 Location: 6813927-6816375 bp Feature: domain Description: TIGR03623 Location: 681 3927-681 6375 bp Feature: gene Location: 6817982-6818392 bp Feature: domain Description: IS5 Location: 6817988-6818366 bp Feature: domain Description: IS5 Location: 681 7988-681 8366 bp Feature: gene Location: 6818513-6820018 bp Feature: RT Description: RVT_N Location: 6818594-6818819 bp Feature: RT Description: RVT_N Location: 681 8594-681 881 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6818870-6819512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 681 8870-681 951 2 bp Feature: domain Description: GIIM Note: maturase Location: 6819563-6819797 bp Feature: domain Description: GIIM Note: maturase Location: 681 9563-681 9797 bp Feature: gene Location: 6820694-6821962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6820907-6821564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6820907-6821 564 bp Feature: domain Description: GIIM Note: maturase Location: 6821642-6821864 bp Feature: domain Description: GIIM Note: maturase Location: 6821 642-6821 864 bp Feature: gene Location: 6822455-6822994 bp Feature: domain Description: IS5 Location: 6822644-6822971 bp Feature: domain Description: IS5 Location: 6822644-6822971 bp Feature: gene Location: 6823602-6824150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), TIGR03623 (probable DNA repair protein), IS5 (COG3039)

Seq: UGUM01000003.1 Pseudomonas aeruginosa strain NCTC13719 genome assembly, contig: ERS1106926SCcontig000003, whole genome shotgun sequence (22552 bp)
Overview 1 RT 1: 12392-18274 bp Neighborhood of RT #1 [12392, 18274] IS5 RVT_N RVT-GII GIIM RVT-GII GIIM IS5 Feature: gene Location: 12392-12580 bp Feature: gene Location: 12969-13379 bp Feature: domain Description: IS5 Location: 12975-13353 bp Feature: domain Description: IS5 Location: 12 975-13353 bp Feature: gene Location: 13500-15005 bp Feature: RT Description: RVT_N Location: 13581-13806 bp Feature: RT Description: RVT_N Location: 13581-13806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13857-14499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13857-14499 bp Feature: domain Description: GIIM Note: maturase Location: 14550-14784 bp Feature: domain Description: GIIM Note: maturase Location: 14550-14784 bp Feature: gene Location: 15422-15622 bp Feature: gene Location: 15681-16949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15894-16551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15894-16551 bp Feature: domain Description: GIIM Note: maturase Location: 16629-16851 bp Feature: domain Description: GIIM Note: maturase Location: 1662 9-16851 bp Feature: gene Location: 17442-17981 bp Feature: domain Description: IS5 Location: 17631-17958 bp Feature: domain Description: IS5 Location: 17631-17958 bp Feature: gene Location: 18146-18274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: UGUM01000001.1 Pseudomonas aeruginosa strain NCTC13719 genome assembly, contig: ERS1106926SCcontig000001, whole genome shotgun sequence (21178 bp)
Overview 1 RT 1: 116-3346 bp Neighborhood of RT #1 [116, 3346] RVT_N RVT-GII GIIM DDE_Tnp_1 Feature: gene Location: 116-316 bp Feature: gene Location: 733-2238 bp Feature: RT Description: RVT_N Location: 814-1039 bp Feature: RT Description: RVT_N Location: 814-103 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1090-1732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1090-173 2 bp Feature: domain Description: GIIM Note: maturase Location: 1783-2017 bp Feature: domain Description: GIIM Note: maturase Location: 1783 -2017 bp Feature: gene Location: 2357-2692 bp Feature: domain Description: DDE_Tnp_1 Location: 2363-2687 bp Feature: domain Description: DDE_Tnp_1 Location: 23 63 -2687 bp Feature: gene Location: 3158-3346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)