myRT

myRT report for GCA_900455485.1_56269_H02

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Seq: UGUR01000001.1 Pseudomonas fluorescens strain NCTC3756 genome assembly, contig: ERS1859682SCcontig000001, whole genome shotgun sequence (5977868 bp)
Overview 1 RT 1: 1487459-1492762 bp 2 RT 2: 1891986-1896193 bp 3 RT 3: 2060609-2066227 bp 4 RT 4: 3362597-3367510 bp 5 RT 5: 3949702-3955299 bp 6 RT 6: 3980507-3985738 bp 7 RT 7: 4287282-4293246 bp 8 RT 8: 4577320-4583322 bp 9 RT 9: 5656271-5662038 bp 10 RT 10: 5775902-5783651 bp Neighborhood of RT #1 [1487459, 1492791] DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Neighborhood of RT #2 [1891986, 1896210] Dcm Dcm RVT-DGRs Avd_like DUF1566 Neighborhood of RT #3 [2060609, 2066241] greB RVT-GII GIIM YbbP YbbA Neighborhood of RT #4 [3362597, 3367539] cztS_silS_copS DDE_Tnp_IS66_C RVT_N RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Neighborhood of RT #5 [3949702, 3955364] COG3817 COG3819 RVT-GII GIIM DadA Neighborhood of RT #6 [3980507, 3985767] RVT-GII GIIM PRK10743 Neighborhood of RT #7 [4287282, 4293254] CoxL CoxS RVT-GII GIIM murB Neighborhood of RT #8 [4577320, 4583327] OmpR DUF2188 RVT_N RVT-GII GIIM HNH groEL groES Neighborhood of RT #9 [5656271, 5662043] PRK07609 PRK10922 RVT-GII GIIM Rho Neighborhood of RT #10 [5775902, 5783668] P-type_ATPase_HM_ZosA_PfeT-like DUF2790 RVT-GII GIIM 2A0601 Feature: gene Location: 1487459-1488073 bp Feature: gene Location: 1488521-1488700 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1488572-1488683 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 488572-1 488683 bp Feature: gene Location: 1488847-1490508 bp Feature: RT Description: RVT_N Location: 1488892-1489135 bp Feature: RT Description: RVT_N Location: 1 488892-1 4891 35 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1489180-1489816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4891 80-1 48981 6 bp Feature: domain Description: GIIM Note: maturase Location: 1489873-1490101 bp Feature: domain Description: GIIM Note: maturase Location: 1 489873-1 4901 01 bp Feature: gene Location: 1491066-1492394 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1491192-1491411 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 491 1 92-1 491 41 1 bp Feature: domain Description: zf-IS66 Location: 1491432-1491558 bp Feature: domain Description: zf-IS66 Location: 1 491 432-1 491 558 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1491600-1492374 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 491 600-1 492374 bp Feature: gene Location: 1492456-1492791 bp Feature: domain Description: TnpB_IS66 Location: 1492474-1492762 bp Feature: domain Description: TnpB_IS66 Location: 1 492474-1 492762 bp Feature: gene Location: 1891986-1892525 bp Feature: gene Location: 1892825-1893763 bp Feature: domain Description: Dcm Location: 1892834-1893461 bp Feature: domain Description: Dcm Location: 1 892834-1 893461 bp Feature: domain Description: Dcm Location: 1893560-1893752 bp Feature: domain Description: Dcm Location: 1 893560-1 893752 bp Feature: gene Location: 1893807-1894925 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1894017-1894770 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 89401 7-1 894770 bp Feature: gene Location: 1895179-1895535 bp Feature: domain Description: Avd_like Location: 1895206-1895515 bp Feature: domain Description: Avd_like Location: 1 895206-1 89551 5 bp Feature: gene Location: 1895590-1896210 bp Feature: domain Description: DUF1566 Location: 1895830-1896193 bp Feature: domain Description: DUF1 566 Location: 1 895830-1 8961 93 bp Feature: gene Location: 2060609-2061082 bp Feature: domain Description: greB Location: 2060618-2061080 bp Feature: domain Description: greB Location: 206061 8-2061 080 bp Feature: gene Location: 2061234-2061404 bp Feature: gene Location: 2061554-2062975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061911-2062526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061 91 1 -2062526 bp Feature: domain Description: GIIM Note: maturase Location: 2062580-2062808 bp Feature: domain Description: GIIM Note: maturase Location: 2062580-2062808 bp Feature: gene Location: 2063048-2065558 bp Feature: domain Description: YbbP Location: 2063075-2065553 bp Feature: domain Description: YbbP Location: 2063075-2065553 bp Feature: gene Location: 2065558-2066241 bp Feature: domain Description: YbbA Location: 2065570-2066227 bp Feature: domain Description: YbbA Location: 2065570-2066227 bp Feature: gene Location: 3362597-3363079 bp Feature: domain Description: cztS_silS_copS Location: 3362603-3363008 bp Feature: domain Description: cztS_silS_copS Location: 3362603-3363008 bp Feature: gene Location: 3363226-3363360 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3363232-3363343 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3363232-3363343 bp Feature: gene Location: 3363552-3365213 bp Feature: RT Description: RVT_N Location: 3363597-3363840 bp Feature: RT Description: RVT_N Location: 3363597-3363840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3363885-3364521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3363885-3364521 bp Feature: domain Description: GIIM Note: maturase Location: 3364578-3364806 bp Feature: domain Description: GIIM Note: maturase Location: 3364578-3364806 bp Feature: gene Location: 3365771-3367141 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3365939-3366152 bp Feature: domain Description: LZ_Tnp_IS66 Location: 3365939-33661 52 bp Feature: domain Description: zf-IS66 Location: 3366179-3366305 bp Feature: domain Description: zf-IS66 Location: 33661 79-3366305 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3366347-3367121 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3366347-33671 21 bp Feature: gene Location: 3367204-3367539 bp Feature: domain Description: TnpB_IS66 Location: 3367222-3367510 bp Feature: domain Description: TnpB_IS66 Location: 3367222-336751 0 bp Feature: gene Location: 3949702-3950652 bp Feature: domain Description: COG3817 Location: 3949705-3950650 bp Feature: domain Description: COG381 7 Location: 3949705-3950650 bp Feature: gene Location: 3950649-3951374 bp Feature: domain Description: COG3819 Location: 3950664-3951339 bp Feature: domain Description: COG381 9 Location: 3950664-3951 339 bp Feature: gene Location: 3951911-3953332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3952268-3952883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3952268-3952883 bp Feature: domain Description: GIIM Note: maturase Location: 3952937-3953165 bp Feature: domain Description: GIIM Note: maturase Location: 3952937-39531 65 bp Feature: gene Location: 3953482-3953652 bp Feature: gene Location: 3954081-3955364 bp Feature: domain Description: DadA Location: 3954168-3955299 bp Feature: domain Description: DadA Location: 39541 68-3955299 bp Feature: gene Location: 3980507-3981460 bp Feature: gene Location: 3981552-3982826 bp Feature: gene Location: 3983408-3984829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3983765-3984380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3983765-3984380 bp Feature: domain Description: GIIM Note: maturase Location: 3984434-3984662 bp Feature: domain Description: GIIM Note: maturase Location: 3984434-3984662 bp Feature: gene Location: 3984979-3985149 bp Feature: gene Location: 3985318-3985767 bp Feature: domain Description: PRK10743 Location: 3985330-3985738 bp Feature: domain Description: PRK1 0743 Location: 3985330-3985738 bp Feature: gene Location: 4287282-4289603 bp Feature: domain Description: CoxL Location: 4287318-4289565 bp Feature: domain Description: CoxL Location: 428731 8-4289565 bp Feature: gene Location: 4289600-4290070 bp Feature: domain Description: CoxS Location: 4289606-4290053 bp Feature: domain Description: CoxS Location: 4289606-4290053 bp Feature: gene Location: 4290335-4291756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4290692-4291307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4290692-4291 307 bp Feature: domain Description: GIIM Note: maturase Location: 4291361-4291589 bp Feature: domain Description: GIIM Note: maturase Location: 4291 361 -4291 589 bp Feature: gene Location: 4291906-4292076 bp Feature: gene Location: 4292235-4293254 bp Feature: domain Description: murB Location: 4292250-4293246 bp Feature: domain Description: murB Location: 4292250-4293246 bp Feature: gene Location: 4577320-4578003 bp Feature: domain Description: OmpR Location: 4577323-4577986 bp Feature: domain Description: OmpR Location: 4577323-4577986 bp Feature: gene Location: 4578296-4578520 bp Feature: domain Description: DUF2188 Location: 4578314-4578491 bp Feature: domain Description: DUF21 88 Location: 457831 4-4578491 bp Feature: gene Location: 4578637-4580298 bp Feature: RT Description: RVT_N Location: 4578691-4578931 bp Feature: RT Description: RVT_N Location: 4578691 -4578931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4578979-4579624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4578979-4579624 bp Feature: domain Description: GIIM Note: maturase Location: 4579675-4579909 bp Feature: domain Description: GIIM Note: maturase Location: 4579675-4579909 bp Feature: domain Description: HNH Note: nucleases Location: 4580149-4580287 bp Feature: domain Description: HNH Note: nucleases Location: 45801 49-4580287 bp Feature: gene Location: 4581335-4582981 bp Feature: domain Description: groEL Location: 4581341-4582964 bp Feature: domain Description: groEL Location: 4581 341 -4582964 bp Feature: gene Location: 4583031-4583327 bp Feature: domain Description: groES Location: 4583040-4583322 bp Feature: domain Description: groES Location: 4583040-4583322 bp Feature: gene Location: 5656271-5657239 bp Feature: domain Description: PRK07609 Location: 5656274-5657234 bp Feature: domain Description: PRK07609 Location: 5656274-5657234 bp Feature: gene Location: 5657239-5658705 bp Feature: domain Description: PRK10922 Location: 5657242-5658700 bp Feature: domain Description: PRK1 0922 Location: 5657242-5658700 bp Feature: gene Location: 5658882-5660303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5659239-5659854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5659239-5659854 bp Feature: domain Description: GIIM Note: maturase Location: 5659908-5660136 bp Feature: domain Description: GIIM Note: maturase Location: 5659908-56601 36 bp Feature: gene Location: 5660453-5660623 bp Feature: gene Location: 5660784-5662043 bp Feature: domain Description: Rho Location: 5660787-5662038 bp Feature: domain Description: Rho Location: 5660787-5662038 bp Feature: gene Location: 5775902-5777899 bp Feature: domain Description: P-type_ATPase_HM_ZosA_PfeT-like Location: 5775992-5777879 bp Feature: domain Description: P-type_ATPase_HM_ZosA_PfeT-like Location: 5775992-5777879 bp Feature: gene Location: 5778101-5778424 bp Feature: domain Description: DUF2790 Location: 5778212-5778410 bp Feature: domain Description: DUF2790 Location: 577821 2-577841 0 bp Feature: gene Location: 5778609-5780030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5778966-5779581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5778966-5779581 bp Feature: domain Description: GIIM Note: maturase Location: 5779635-5779863 bp Feature: domain Description: GIIM Note: maturase Location: 5779635-5779863 bp Feature: gene Location: 5780180-5780350 bp Feature: gene Location: 5780507-5783668 bp Feature: domain Description: 2A0601 Location: 5780510-5783651 bp Feature: domain Description: 2A0601 Location: 578051 0-5783651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), Dcm (COG0270), RVT-DGRs
Avd_like (cd16376), DUF1566 (pfam07603), greB (TIGR01461), YbbP (COG3127), YbbA (COG4181), cztS_silS_copS (TIGR01386), COG3817 (Uncharacterized membrane protein ), COG3819 (Uncharacterized membrane protein ), DadA (COG0665), PRK10743 (heat shock chaperone IbpA)
CoxL (COG1529), CoxS (COG2080), murB (TIGR00179), OmpR (COG0745), DUF2188 (pfam09954), HNH (pfam01844), groEL (PRK12852), groES (PRK14533), PRK07609 (CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated), PRK10922 (4-hydroxy-3-polyprenylbenzoate decarboxylase)
Rho (COG1158), P-type_ATPase_HM_ZosA_PfeT-like (cd07551), DUF2790 (pfam10976), 2A0601 (TIGR00914)