myRT

myRT report for GCA_900455605.1_44787_H01

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Seq: UGUZ01000001.1 Pseudomonas putida strain NCTC912 genome assembly, contig: ERS1068184SCcontig000001, whole genome shotgun sequence (5511083 bp)
Overview 1 RT 1: 25437-31831 bp 2 RT 2: 246664-251232 bp 3 RT 3: 261499-265731 bp 4 RT 4: 386590-393636 bp 5 RT 5: 432331-441073 bp 6 RT 6: 543273-548904 bp 7 RT 7: 690347-693759 bp 8 RT 8: 1219372-1225860 bp 9 RT 9: 1481759-1485958 bp 10 RT 10: 2368296-2373266 bp 11 RT 11: 3343186-3345918 bp 12 RT 12: 5058621-5062026 bp 13 RT 13: 5362750-5370499 bp Neighborhood of RT #1 [25437, 31833] fmt def RVT_N RVT-GII YkfC HNHc Smf SUA5 Neighborhood of RT #2 [246664, 251363] PckA RVT-GII GIIM FadM Gly-zipper_YMGG Gly-zipper_YMGG Neighborhood of RT #3 [261499, 265731] rmlC PRK13551 RVT-GII GIIM Neighborhood of RT #4 [386590, 393671] PTZ00456 RVT-GII GIIM GGDEF PTZ00456 Neighborhood of RT #5 [432331, 441099] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #6 [543273, 548933] Nnt1 YbaY RVT_N RVT-GII GIIM HNHc TIGR00244 ribD Neighborhood of RT #7 [690347, 694160] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII Neighborhood of RT #8 [1219372, 1225871] PRK05657 RVT-GII GIIM PreA DUF3470 mutS1 Neighborhood of RT #9 [1481759, 1485969] DUF4223 RVT-GII GIIM PRK14050 STN PRK10044 PRK10044 Neighborhood of RT #10 [2368296, 2373280] Dcm RVT-DGRs Avd_like DUF1566 Neighborhood of RT #11 [3343186, 3345926] RVT-GII GIIM MvaT_DBD Neighborhood of RT #12 [5058621, 5062043] PRK10358 RVT-GII GIIM SecB Neighborhood of RT #13 [5362750, 5370516] P-type_ATPase_HM_ZosA_PfeT-like DUF2790 RVT-GII GIIM 2A0601 Feature: gene Location: 25437-26369 bp Feature: domain Description: fmt Location: 25440-26352 bp Feature: domain Description: fmt Location: 25440-26352 bp Feature: gene Location: 26430-26936 bp Feature: domain Description: def Location: 26433-26919 bp Feature: domain Description: def Location: 26433-2691 9 bp Feature: gene Location: 27045-28751 bp Feature: RT Description: RVT_N Location: 27102-27345 bp Feature: RT Description: RVT_N Location: 271 02-27345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27390-28026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27390-28026 bp Feature: domain Description: YkfC Location: 28233-28386 bp Feature: domain Description: YkfC Location: 28233-28386 bp Feature: domain Description: HNHc Note: nucleases Location: 28539-28695 bp Feature: domain Description: HNHc Note: nucleases Location: 28539-28695 bp Feature: gene Location: 30128-31234 bp Feature: domain Description: Smf Location: 30173-31226 bp Feature: domain Description: Smf Location: 301 73-31 226 bp Feature: gene Location: 31276-31833 bp Feature: domain Description: SUA5 Location: 31294-31831 bp Feature: domain Description: SUA5 Location: 31 294-31 831 bp Feature: gene Location: 246664-248205 bp Feature: domain Description: PckA Location: 246670-248200 bp Feature: domain Description: PckA Location: 246670-248200 bp Feature: gene Location: 248363-248533 bp Feature: gene Location: 248683-250104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249040-249655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 249040-249655 bp Feature: domain Description: GIIM Note: maturase Location: 249709-249937 bp Feature: domain Description: GIIM Note: maturase Location: 249709-249937 bp Feature: gene Location: 250389-250829 bp Feature: domain Description: FadM Location: 250416-250803 bp Feature: domain Description: FadM Location: 25041 6-250803 bp Feature: gene Location: 250884-251363 bp Feature: domain Description: Gly-zipper_YMGG Location: 250965-251085 bp Feature: domain Description: Gly-zipper_YMGG Location: 250965-251 085 bp Feature: domain Description: Gly-zipper_YMGG Location: 251103-251232 bp Feature: domain Description: Gly-zipper_YMGG Location: 251 1 03-251 232 bp Feature: gene Location: 261499-262044 bp Feature: domain Description: rmlC Location: 261505-262033 bp Feature: domain Description: rmlC Location: 261 505-262033 bp Feature: gene Location: 262322-263428 bp Feature: domain Description: PRK13551 Location: 262337-263414 bp Feature: domain Description: PRK1 3551 Location: 262337-26341 4 bp Feature: gene Location: 263514-264935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263871-264486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263871 -264486 bp Feature: domain Description: GIIM Note: maturase Location: 264540-264768 bp Feature: domain Description: GIIM Note: maturase Location: 264540-264768 bp Feature: gene Location: 265085-265255 bp Feature: gene Location: 265534-265731 bp Feature: gene Location: 386590-388395 bp Feature: domain Description: PTZ00456 Location: 386602-388381 bp Feature: domain Description: PTZ00456 Location: 386602-388381 bp Feature: gene Location: 388558-388728 bp Feature: gene Location: 388878-390299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389235-389850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389235-389850 bp Feature: domain Description: GIIM Note: maturase Location: 389904-390132 bp Feature: domain Description: GIIM Note: maturase Location: 389904-3901 32 bp Feature: gene Location: 390485-391768 bp Feature: domain Description: GGDEF Location: 391217-391724 bp Feature: domain Description: GGDEF Location: 391 21 7-391 724 bp Feature: gene Location: 391893-393671 bp Feature: domain Description: PTZ00456 Location: 391902-393636 bp Feature: domain Description: PTZ00456 Location: 391 902-393636 bp Feature: gene Location: 432331-433617 bp Feature: domain Description: PRK10770 Location: 432373-433585 bp Feature: domain Description: PRK1 0770 Location: 432373-433585 bp Feature: gene Location: 433631-436399 bp Feature: domain Description: LptD Location: 433922-436382 bp Feature: domain Description: LptD Location: 433922-436382 bp Feature: gene Location: 436582-438288 bp Feature: RT Description: RVT_N Location: 436639-436882 bp Feature: RT Description: RVT_N Location: 436639-436882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436927-437560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436927-437560 bp Feature: domain Description: YkfC Location: 437761-437950 bp Feature: domain Description: YkfC Location: 437761 -437950 bp Feature: domain Description: HNH Note: nucleases Location: 438100-438238 bp Feature: domain Description: HNH Note: nucleases Location: 4381 00-438238 bp Feature: gene Location: 439412-440431 bp Feature: domain Description: COG3178 Location: 439493-440414 bp Feature: domain Description: COG31 78 Location: 439493-44041 4 bp Feature: gene Location: 440428-441099 bp Feature: domain Description: NTP_transferase_like_1 Location: 440434-441073 bp Feature: domain Description: NTP_transferase_like_1 Location: 440434-441 073 bp Feature: gene Location: 543273-543932 bp Feature: domain Description: Nnt1 Location: 543348-543741 bp Feature: domain Description: Nnt1 Location: 543348-543741 bp Feature: gene Location: 543933-544415 bp Feature: domain Description: YbaY Location: 543987-544392 bp Feature: domain Description: YbaY Location: 543987-544392 bp Feature: gene Location: 545537-547243 bp Feature: RT Description: RVT_N Location: 545594-545831 bp Feature: RT Description: RVT_N Location: 545594-545831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545882-546518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545882-54651 8 bp Feature: domain Description: GIIM Note: maturase Location: 546569-546803 bp Feature: domain Description: GIIM Note: maturase Location: 546569-546803 bp Feature: domain Description: HNHc Note: nucleases Location: 547022-547187 bp Feature: domain Description: HNHc Note: nucleases Location: 547022-5471 87 bp Feature: gene Location: 547336-547800 bp Feature: domain Description: TIGR00244 Location: 547339-547777 bp Feature: domain Description: TIGR00244 Location: 547339-547777 bp Feature: gene Location: 547803-548933 bp Feature: domain Description: ribD Location: 547830-548904 bp Feature: domain Description: ribD Location: 547830-548904 bp Feature: gene Location: 690347-690571 bp Feature: domain Description: TnpB_IS66 Location: 690377-690566 bp Feature: domain Description: TnpB_IS66 Location: 690377-690566 bp Feature: gene Location: 690725-692260 bp Feature: domain Description: LZ_Tnp_IS66 Location: 690833-691046 bp Feature: domain Description: LZ_Tnp_IS66 Location: 690833-691 046 bp Feature: domain Description: zf-IS66 Location: 691076-691199 bp Feature: domain Description: zf-IS66 Location: 691 076-691 1 99 bp Feature: domain Description: DDE_Tnp_IS66 Location: 691244-692099 bp Feature: domain Description: DDE_Tnp_IS66 Location: 691 244-692099 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 692120-692234 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6921 20-692234 bp Feature: gene Location: 692568-694160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693072-693759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693072-693759 bp Feature: gene Location: 1219372-1220379 bp Feature: domain Description: PRK05657 Location: 1219432-1220374 bp Feature: domain Description: PRK05657 Location: 1 21 9432-1 220374 bp Feature: gene Location: 1220535-1220705 bp Feature: gene Location: 1220855-1222276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1221212-1221827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 221 21 2-1 221 827 bp Feature: domain Description: GIIM Note: maturase Location: 1221881-1222109 bp Feature: domain Description: GIIM Note: maturase Location: 1 221 881 -1 2221 09 bp Feature: gene Location: 1222822-1223145 bp Feature: domain Description: PreA Location: 1222834-1223008 bp Feature: domain Description: PreA Location: 1 222834-1 223008 bp Feature: domain Description: DUF3470 Location: 1223020-1223143 bp Feature: domain Description: DUF3470 Location: 1 223020-1 2231 43 bp Feature: gene Location: 1223286-1225871 bp Feature: domain Description: mutS1 Location: 1223319-1225860 bp Feature: domain Description: mutS1 Location: 1 22331 9-1 225860 bp Feature: gene Location: 1481759-1481950 bp Feature: domain Description: DUF4223 Location: 1481762-1481930 bp Feature: domain Description: DUF4223 Location: 1 481 762-1 481 930 bp Feature: gene Location: 1482135-1482305 bp Feature: gene Location: 1482455-1483876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1482812-1483427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 48281 2-1 483427 bp Feature: domain Description: GIIM Note: maturase Location: 1483481-1483709 bp Feature: domain Description: GIIM Note: maturase Location: 1 483481 -1 483709 bp Feature: gene Location: 1483962-1484126 bp Feature: domain Description: PRK14050 Location: 1483965-1484124 bp Feature: domain Description: PRK1 4050 Location: 1 483965-1 4841 24 bp Feature: gene Location: 1484134-1485969 bp Feature: domain Description: STN Location: 1484341-1484470 bp Feature: domain Description: STN Location: 1 484341 -1 484470 bp Feature: domain Description: PRK10044 Location: 1484560-1485619 bp Feature: domain Description: PRK1 0044 Location: 1 484560-1 48561 9 bp Feature: domain Description: PRK10044 Location: 1485634-1485958 bp Feature: domain Description: PRK1 0044 Location: 1 485634-1 485958 bp Feature: gene Location: 2368296-2370116 bp Feature: domain Description: Dcm Location: 2368377-2370066 bp Feature: domain Description: Dcm Location: 2368377-2370066 bp Feature: gene Location: 2370180-2370902 bp Feature: gene Location: 2370946-2372103 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2371195-2371948 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2371 1 95-2371 948 bp Feature: gene Location: 2372302-2372655 bp Feature: domain Description: Avd_like Location: 2372329-2372635 bp Feature: domain Description: Avd_like Location: 2372329-2372635 bp Feature: gene Location: 2372708-2373280 bp Feature: domain Description: DUF1566 Location: 2373038-2373266 bp Feature: domain Description: DUF1 566 Location: 2373038-2373266 bp Feature: gene Location: 3343186-3343416 bp Feature: gene Location: 3343657-3344979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3343915-3344530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334391 5-3344530 bp Feature: domain Description: GIIM Note: maturase Location: 3344587-3344812 bp Feature: domain Description: GIIM Note: maturase Location: 3344587-334481 2 bp Feature: gene Location: 3345213-3345398 bp Feature: gene Location: 3345558-3345926 bp Feature: domain Description: MvaT_DBD Location: 3345798-3345918 bp Feature: domain Description: MvaT_DBD Location: 3345798-334591 8 bp Feature: gene Location: 5058621-5059058 bp Feature: gene Location: 5058982-5059518 bp Feature: domain Description: PRK10358 Location: 5059060-5059513 bp Feature: domain Description: PRK1 0358 Location: 5059060-505951 3 bp Feature: gene Location: 5059662-5060984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5059920-5060535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5059920-5060535 bp Feature: domain Description: GIIM Note: maturase Location: 5060592-5060817 bp Feature: domain Description: GIIM Note: maturase Location: 5060592-506081 7 bp Feature: gene Location: 5061218-5061403 bp Feature: gene Location: 5061558-5062043 bp Feature: domain Description: SecB Location: 5061588-5062026 bp Feature: domain Description: SecB Location: 5061 588-5062026 bp Feature: gene Location: 5362750-5364747 bp Feature: domain Description: P-type_ATPase_HM_ZosA_PfeT-like Location: 5362840-5364727 bp Feature: domain Description: P-type_ATPase_HM_ZosA_PfeT-like Location: 5362840-5364727 bp Feature: gene Location: 5364949-5365272 bp Feature: domain Description: DUF2790 Location: 5365060-5365258 bp Feature: domain Description: DUF2790 Location: 5365060-5365258 bp Feature: gene Location: 5365457-5366878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5365814-5366429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536581 4-5366429 bp Feature: domain Description: GIIM Note: maturase Location: 5366483-5366711 bp Feature: domain Description: GIIM Note: maturase Location: 5366483-536671 1 bp Feature: gene Location: 5367028-5367198 bp Feature: gene Location: 5367355-5370516 bp Feature: domain Description: 2A0601 Location: 5367358-5370499 bp Feature: domain Description: 2A0601 Location: 5367358-5370499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT fmt (TIGR00460), def (PRK00150), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), Smf (COG0758), SUA5 (pfam03481), PckA (COG1866), GIIM (pfam08388)
FadM (COG0824), Gly-zipper_YMGG (pfam13441), rmlC (TIGR01221), PRK13551 (agmatine deiminase; Provisional), PTZ00456 (acyl-CoA dehydrogenase; Provisional), GGDEF (TIGR00254), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), HNH (pfam01844), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )
NTP_transferase_like_1 (cd06422), Nnt1 (COG3897), YbaY (COG3126), TIGR00244 (transcriptional regulator NrdR), ribD (PRK10786), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)
PRK05657 (RNA polymerase sigma factor RpoS; Validated), PreA (COG1146), DUF3470 (pfam11953), mutS1 (TIGR01070), DUF4223 (pfam13978), PRK14050 (TonB-dependent siderophore receptor), STN (smart00965), PRK10044 (ferrichrome outer membrane transporter; Provisional), Dcm (COG0270), RVT-DGRs
Avd_like (cd16376), DUF1566 (pfam07603), MvaT_DBD (cl40688), PRK10358 (tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL), SecB (pfam02556), P-type_ATPase_HM_ZosA_PfeT-like (cd07551), DUF2790 (pfam10976), 2A0601 (TIGR00914)