myRT

myRT report for GCA_900456075.1_47328_A01

Download annotations/find similar RTs

Seq: UGWO01000001.1 Salmonella enterica strain NCTC10056 genome assembly, contig: ERS1199547SCcontig000001, whole genome shotgun sequence (198233 bp)
Overview 1 RT 1: 9503-11789 bp 2 RT 2: 106183-110160 bp Neighborhood of RT #1 [9503, 11797] PhdYeFM_antitox ParE_toxin RVT-GII PinE Neighborhood of RT #2 [106183, 110273] COG3547 COG3547 RVT-GII DEDD_Tnp_IS110 Transposase_20 phd_fam Feature: gene Location: 9503-9730 bp Ori: SUF49561.1 Feature: domain Description: PhdYeFM_antitox Location: 9506-9692 bp Feature: domain Description: PhdYeFM_antitox Location: 9506-9692 bp Feature: gene Location: 9730-10056 bp Ori: SUF49562.1 Feature: domain Description: ParE_toxin Location: 9745-10018 bp Feature: domain Description: ParE_toxin Location: 9745-1 001 8 bp Feature: gene Location: 10080-10427 bp Ori: SUF49563.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10353-10410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0353-1 041 0 bp Feature: gene Location: 10967-11212 bp Feature: gene Location: 11234-11797 bp Ori: SUF49565.1 Gene: tnpR_1 Feature: domain Description: PinE Location: 11237-11789 bp Feature: domain Description: PinE Location: 1 1 237-1 1 789 bp Feature: gene Location: 106183-106383 bp Ori: SUF49666.1 Feature: domain Description: COG3547 Location: 106198-106381 bp Feature: domain Description: COG3547 Location: 1 061 98-1 06381 bp Feature: gene Location: 106405-106851 bp Ori: SUF49667.1 Feature: domain Description: COG3547 Location: 106414-106849 bp Feature: domain Description: COG3547 Location: 1 0641 4-1 06849 bp Feature: gene Location: 107532-108173 bp Ori: SUF49668.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107535-108009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 07535-1 08009 bp Feature: gene Location: 108513-109682 bp Ori: SUF49669.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 108555-109017 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 08555-1 0901 7 bp Feature: domain Description: Transposase_20 Location: 109317-109560 bp Feature: domain Description: Transposase_20 Location: 1 0931 7-1 09560 bp Feature: gene Location: 110004-110273 bp Ori: SUF49670.1 Feature: domain Description: phd_fam Location: 110016-110160 bp Feature: domain Description: phd_fam Location: 1 1 001 6-1 1 01 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhdYeFM_antitox (pfam02604), ParE_toxin (pfam05016), RVT-GII, PinE (COG1961), COG3547 (Transposase ), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), phd_fam (TIGR01552)