myRT

myRT report for GCA_900456335.1_49386_B02

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Seq: UGWQ01000004.1 Salmonella enterica strain NCTC10718 genome assembly, contig: ERS1199555SCcontig000004, whole genome shotgun sequence (190255 bp)
Overview 1 RT 1: 18972-22654 bp 2 RT 2: 73176-75009 bp Neighborhood of RT #1 [18972, 22665] Phage_integrase RVT_N RVT-GII GIIM HNHc PRK09857 Neighborhood of RT #2 [73176, 75014] IS285 RVT-GII HTH_37 COG4683 Feature: gene Location: 18972-19130 bp Feature: gene Location: 19204-19962 bp Feature: domain Description: Phage_integrase Location: 19210-19708 bp Feature: domain Description: Phage_integrase Location: 1 921 0-1 9708 bp Feature: gene Location: 20158-21843 bp Feature: domain Description: RVT_N Location: 20206-20440 bp Feature: domain Description: RVT_N Location: 20206-20440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20494-21136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20494-21 1 36 bp Feature: domain Description: GIIM Note: maturase Location: 21190-21424 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 90-21 424 bp Feature: domain Description: HNHc Note: nucleases Location: 21640-21796 bp Feature: domain Description: HNHc Note: nucleases Location: 21 640-21 796 bp Feature: gene Location: 22223-22369 bp Feature: gene Location: 22423-22665 bp Feature: domain Description: PRK09857 Location: 22429-22654 bp Feature: domain Description: PRK09857 Location: 22429-22654 bp Feature: gene Location: 73176-73388 bp Feature: gene Location: 73401-73934 bp Feature: domain Description: IS285 Location: 73482-73851 bp Feature: domain Description: IS285 Location: 73482-73851 bp Feature: gene Location: 74129-74317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74144-74297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 741 44-74297 bp Feature: gene Location: 74368-74667 bp Feature: domain Description: HTH_37 Location: 74407-74632 bp Feature: domain Description: HTH_37 Location: 74407-74632 bp Feature: gene Location: 74664-75014 bp Feature: domain Description: COG4683 Location: 74667-75009 bp Feature: domain Description: COG4683 Location: 74667-75009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK09857 (recombination-promoting nuclease RpnA), IS285 (COG3328), HTH_37 (pfam13744), COG4683 (Uncharacterized protein )

Seq: UGWQ01000003.1 Salmonella enterica strain NCTC10718 genome assembly, contig: ERS1199555SCcontig000003, whole genome shotgun sequence (162614 bp)
Overview 1 RT 1: 43005-53904 bp Neighborhood of RT #1 [43005, 53999] cysS RVT-UG4 IAT_beta BID_1 BID_1 BID_1 BID_1 BID_1 BID_1 BID_1 HTH_LUXR Feature: gene Location: 43005-44396 bp Feature: domain Description: cysS Location: 43011-44391 bp Feature: domain Description: cysS Location: 43011-44391 bp Feature: gene Location: 44678-45958 bp Feature: gene Location: 46086-47243 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 46494-46938 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 46494-46938 bp Feature: gene Location: 47285-53002 bp Feature: domain Description: IAT_beta Location: 47669-48518 bp Feature: domain Description: IAT_beta Location: 47669-48518 bp Feature: domain Description: BID_1 Location: 48857-48980 bp Feature: domain Description: BID_1 Location: 48857-48980 bp Feature: domain Description: BID_1 Location: 49226-49475 bp Feature: domain Description: BID_1 Location: 492 2 6-49475 bp Feature: domain Description: BID_1 Location: 49610-49886 bp Feature: domain Description: BID_1 Location: 49610-49886 bp Feature: domain Description: BID_1 Location: 49991-50276 bp Feature: domain Description: BID_1 Location: 49991-502 76 bp Feature: domain Description: BID_1 Location: 50369-50597 bp Feature: domain Description: BID_1 Location: 50369-50597 bp Feature: domain Description: BID_1 Location: 51116-51308 bp Feature: domain Description: BID_1 Location: 51116-51308 bp Feature: domain Description: BID_1 Location: 51443-51632 bp Feature: domain Description: BID_1 Location: 51443-51632 bp Feature: gene Location: 53313-53999 bp Feature: domain Description: HTH_LUXR Location: 53745-53904 bp Feature: domain Description: HTH_LUXR Location: 53745-53904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cysS (TIGR00435), RVT-UG4, IAT_beta (pfam11924), BID_1 (smart00634), HTH_LUXR (smart00421)