myRT

myRT report for GCA_900456515.1_35910_B01

Download annotations/find similar RTs

Seq: UGXI01000001.1 Salmonella enterica subsp. arizonae strain NCTC7349 genome assembly, contig: ERS659569SCcontig000001, whole genome shotgun sequence (5333456 bp)
Overview 1 RT 1: 1861882-1867201 bp 2 RT 2: 1981857-1985401 bp 3 RT 3: 4222230-4233281 bp Neighborhood of RT #1 [1861882, 1867201] FimC PRK15223 RVT-UG4 Neighborhood of RT #2 [1981857, 1985421] RVT-GII GIIM DDE_Tnp_IS66 RimL Neighborhood of RT #3 [4222230, 4233286] SunT DDE_Tnp_1_5 RVT_N RVT-GII INT_RitC_C_like Phage_int_SAM_1 INT_RitB_C_like Phage_int_SAM_4 INT_RitA_C_like RVT-GII GIIM Transposase_20 GanA Feature: gene Location: 1861882-1862673 bp Feature: domain Description: FimC Location: 1861969-1862659 bp Feature: domain Description: FimC Location: 1 861 969-1 862659 bp Feature: gene Location: 1862800-1865313 bp Feature: domain Description: PRK15223 Location: 1862803-1865311 bp Feature: domain Description: PRK1 5223 Location: 1 862803-1 86531 1 bp Feature: gene Location: 1865331-1866305 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1865685-1866132 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 865685-1 8661 32 bp Feature: gene Location: 1866351-1866842 bp Feature: gene Location: 1866959-1867201 bp Feature: gene Location: 1981857-1982198 bp Feature: gene Location: 1982349-1982594 bp Feature: gene Location: 1982860-1984299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1983259-1983925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 983259-1 983925 bp Feature: domain Description: GIIM Note: maturase Location: 1983991-1984201 bp Feature: domain Description: GIIM Note: maturase Location: 1 983991 -1 984201 bp Feature: gene Location: 1984375-1984767 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1984378-1984681 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 984378-1 984681 bp Feature: gene Location: 1984948-1985421 bp Feature: domain Description: RimL Location: 1984972-1985401 bp Feature: domain Description: RimL Location: 1 984972-1 985401 bp Feature: gene Location: 4222230-4224329 bp Feature: domain Description: SunT Location: 4222290-4224321 bp Feature: domain Description: SunT Location: 4222290-4224321 bp Feature: gene Location: 4224361-4225230 bp Feature: domain Description: DDE_Tnp_1_5 Location: 4224463-4224781 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 4224463-4224781 bp Feature: gene Location: 4226005-4226676 bp Feature: domain Description: RVT_N Location: 4226008-4226200 bp Feature: domain Description: RVT_N Location: 4226008-4226200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4226245-4226620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4226245-4226620 bp Feature: gene Location: 4226726-4227283 bp Feature: domain Description: INT_RitC_C_like Location: 4226729-4227203 bp Feature: domain Description: INT_RitC_C_like Location: 4226729-4227203 bp Feature: gene Location: 4227363-4227683 bp Feature: domain Description: Phage_int_SAM_1 Location: 4227408-4227651 bp Feature: domain Description: Phage_int_SAM_1 Location: 4227408-4227651 bp Feature: gene Location: 4227673-4228650 bp Feature: domain Description: INT_RitB_C_like Location: 4228006-4228588 bp Feature: domain Description: INT_RitB_C_like Location: 4228006-4228588 bp Feature: gene Location: 4228650-4229549 bp Feature: domain Description: Phage_int_SAM_4 Location: 4228989-4229208 bp Feature: domain Description: Phage_int_SAM_4 Location: 4228989-4229208 bp Feature: domain Description: INT_RitA_C_like Location: 4229220-4229514 bp Feature: domain Description: INT_RitA_C_like Location: 4229220-422951 4 bp Feature: gene Location: 4229741-4230478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4229771-4229957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4229771 -4229957 bp Feature: domain Description: GIIM Note: maturase Location: 4230011-4230245 bp Feature: domain Description: GIIM Note: maturase Location: 423001 1 -4230245 bp Feature: gene Location: 4230820-4231089 bp Feature: domain Description: Transposase_20 Location: 4230823-4230958 bp Feature: domain Description: Transposase_20 Location: 4230823-4230958 bp Feature: gene Location: 4231238-4233286 bp Feature: domain Description: GanA Location: 4231271-4233281 bp Feature: domain Description: GanA Location: 4231 271 -4233281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), PRK15223 (fimbrial biogenesis outer membrane usher protein), RVT-UG4, RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), RimL (COG1670), SunT (COG2274), DDE_Tnp_1_5 (pfam13737), RVT_N (pfam13655)
INT_RitC_C_like (cd01182), Phage_int_SAM_1 (pfam02899), INT_RitB_C_like (cd00797), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), Transposase_20 (pfam02371), GanA (COG1874)