myRT

myRT report for GCA_900456605.1_39111_E01

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Seq: UGXZ01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain NCTC5743 genome assembly, contig: ERS743094SCcontig000002, whole genome shotgun sequence (4573357 bp)
Overview 1 RT 1: 4053624-4059096 bp 2 RT 2: 4562954-4567229 bp Neighborhood of RT #1 [4053624, 4059110] DUF4156 RVT_N RVT-GII GIIM HNHc groEL Neighborhood of RT #2 [4562954, 4567229] PRK10473 RVT-Retrons Feature: gene Location: 4053624-4053989 bp Feature: domain Description: DUF4156 Location: 4053705-4053981 bp Feature: domain Description: DUF41 56 Location: 4053705-4053981 bp Feature: gene Location: 4054340-4054663 bp Feature: gene Location: 4054668-4056365 bp Feature: RT Description: RVT_N Location: 4054731-4054965 bp Feature: RT Description: RVT_N Location: 4054731 -4054965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4055019-4055664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405501 9-4055664 bp Feature: domain Description: GIIM Note: maturase Location: 4055718-4055949 bp Feature: domain Description: GIIM Note: maturase Location: 405571 8-4055949 bp Feature: domain Description: HNHc Note: nucleases Location: 4056159-4056315 bp Feature: domain Description: HNHc Note: nucleases Location: 40561 59-405631 5 bp Feature: gene Location: 4056797-4057123 bp Feature: gene Location: 4057464-4059110 bp Feature: domain Description: groEL Location: 4057470-4059096 bp Feature: domain Description: groEL Location: 4057470-4059096 bp Feature: gene Location: 4562954-4564141 bp Feature: domain Description: PRK10473 Location: 4562957-4564133 bp Feature: domain Description: PRK1 0473 Location: 4562957-45641 33 bp Feature: gene Location: 4564486-4564695 bp Feature: gene Location: 4565042-4565977 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4565153-4565738 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45651 53-4565738 bp Feature: gene Location: 4565977-4566939 bp Feature: gene Location: 4566966-4567229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852), PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons