myRT

myRT report for GCA_900456885.1_35605_C02

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Seq: UGYF01000003.1 Salmonella enterica subsp. salamae strain NCTC9606 genome assembly, contig: ERS647566SCcontig000003, whole genome shotgun sequence (158756 bp)
Overview 1 RT 1: 2-3025 bp 2 RT 2: 141782-152327 bp Neighborhood of RT #1 [2, 3025] RVT-UG4 Neighborhood of RT #2 [141782, 152422] cysS RVT-UG4 IAT_beta BID_1 BID_1 BID_1 BID_1 BID_1 BID_1 BID_1 HTH_LUXR Feature: gene Location: 2-469 bp Feature: gene Location: 645-950 bp Feature: gene Location: 1028-1753 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1052-1448 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 052-1 448 bp Feature: gene Location: 1760-2104 bp Feature: gene Location: 2129-3025 bp Feature: gene Location: 141782-143173 bp Feature: domain Description: cysS Location: 141788-143168 bp Feature: domain Description: cysS Location: 1 41 788-1 431 68 bp Feature: gene Location: 143455-144735 bp Feature: gene Location: 144863-146020 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 145271-145715 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 45271 -1 4571 5 bp Feature: gene Location: 146062-151782 bp Feature: domain Description: IAT_beta Location: 146449-147298 bp Feature: domain Description: IAT_beta Location: 1 46449-1 47298 bp Feature: domain Description: BID_1 Location: 147637-147760 bp Feature: domain Description: BID_1 Location: 1 47637-1 47760 bp Feature: domain Description: BID_1 Location: 148006-148255 bp Feature: domain Description: BID_1 Location: 1 48006-1 48255 bp Feature: domain Description: BID_1 Location: 148390-148666 bp Feature: domain Description: BID_1 Location: 1 48390-1 48666 bp Feature: domain Description: BID_1 Location: 148771-149056 bp Feature: domain Description: BID_1 Location: 1 48771 -1 49056 bp Feature: domain Description: BID_1 Location: 149149-149377 bp Feature: domain Description: BID_1 Location: 1 491 49-1 49377 bp Feature: domain Description: BID_1 Location: 149896-150088 bp Feature: domain Description: BID_1 Location: 1 49896-1 50088 bp Feature: domain Description: BID_1 Location: 150223-150412 bp Feature: domain Description: BID_1 Location: 1 50223-1 5041 2 bp Feature: gene Location: 152090-152422 bp Feature: domain Description: HTH_LUXR Location: 152168-152327 bp Feature: domain Description: HTH_LUXR Location: 1 521 68-1 52327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, cysS (TIGR00435), IAT_beta (pfam11924), BID_1 (smart00634), HTH_LUXR (smart00421)

Seq: UGYF01000002.1 Salmonella enterica subsp. salamae strain NCTC9606 genome assembly, contig: ERS647566SCcontig000002, whole genome shotgun sequence (177126 bp)
Overview 1 RT 1: 113313-116934 bp 2 RT 2: 157842-159675 bp Neighborhood of RT #1 [113313, 116934] PRK09857 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [157842, 159680] IS285 RVT-GII HTH_37 COG4683 Feature: gene Location: 113313-113555 bp Feature: domain Description: PRK09857 Location: 113319-113544 bp Feature: domain Description: PRK09857 Location: 113319-113544 bp Feature: gene Location: 113799-113999 bp Feature: gene Location: 114135-115820 bp Feature: domain Description: RVT_N Location: 114183-114417 bp Feature: domain Description: RVT_N Location: 114183-114417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114471-115113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114471-115113 bp Feature: domain Description: GIIM Note: maturase Location: 115167-115401 bp Feature: domain Description: GIIM Note: maturase Location: 115167-115401 bp Feature: domain Description: HNHc Note: nucleases Location: 115617-115773 bp Feature: domain Description: HNHc Note: nucleases Location: 115617-115773 bp Feature: gene Location: 115906-116151 bp Feature: gene Location: 116281-116934 bp Feature: gene Location: 157842-158054 bp Feature: gene Location: 158067-158600 bp Feature: domain Description: IS285 Location: 158148-158517 bp Feature: domain Description: IS2 85 Location: 158148-158517 bp Feature: gene Location: 158795-158983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158810-158963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158810-158963 bp Feature: gene Location: 159034-159333 bp Feature: domain Description: HTH_37 Location: 159073-159298 bp Feature: domain Description: HTH_37 Location: 159073-1592 98 bp Feature: gene Location: 159330-159680 bp Feature: domain Description: COG4683 Location: 159333-159675 bp Feature: domain Description: COG4683 Location: 159333-159675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09857 (recombination-promoting nuclease RpnA), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), IS285 (COG3328), HTH_37 (pfam13744), COG4683 (Uncharacterized protein )