myRT

myRT report for GCA_900457045.1_44738_B01

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Seq: UGYV01000007.1 Shewanella putrefaciens strain NCTC10736 genome assembly, contig: ERS1066615SCcontig000007, whole genome shotgun sequence (13019 bp)
Overview 1 RT 1: 1773-10355 bp Neighborhood of RT #1 [1773, 10846] COG3940 group_II_RT_mat RVT-GII GIIM RVT-GII GIIM Glyco_hydro_127 DUF4986 Feature: gene Location: 1773-2960 bp Ori: SUJ14645.1 Feature: domain Description: COG3940 Location: 2022-2946 bp Feature: domain Description: COG3940 Location: 2022-2946 bp Feature: gene Location: 4231-4542 bp Ori: SUJ14655.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 4342-4519 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4342-451 9 bp Feature: gene Location: 4841-5533 bp Ori: SUJ14663.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4850-5132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4850-51 32 bp Feature: domain Description: GIIM Note: maturase Location: 5180-5384 bp Feature: domain Description: GIIM Note: maturase Location: 51 80-5384 bp Feature: gene Location: 5683-5994 bp Feature: gene Location: 6174-6476 bp Feature: gene Location: 7114-8463 bp Ori: SUJ14687.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7396-8014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7396-801 4 bp Feature: domain Description: GIIM Note: maturase Location: 8062-8266 bp Feature: domain Description: GIIM Note: maturase Location: 8062-8266 bp Feature: gene Location: 8553-8924 bp Feature: gene Location: 9809-10846 bp Ori: SUJ14700.1 Feature: domain Description: Glyco_hydro_127 Location: 9815-10091 bp Feature: domain Description: Glyco_hydro_1 27 Location: 981 5-1 0091 bp Feature: domain Description: DUF4986 Location: 10130-10355 bp Feature: domain Description: DUF4986 Location: 1 01 30-1 0355 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3940 (Beta-xylosidase, GH43 family ), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375)

Seq: UGYV01000001.1 Shewanella putrefaciens strain NCTC10736 genome assembly, contig: ERS1066615SCcontig000001, whole genome shotgun sequence (4235666 bp)
Overview 1 RT 1: 126439-131971 bp 2 RT 2: 641065-644728 bp 3 RT 3: 1320985-1326291 bp 4 RT 4: 1343198-1351175 bp 5 RT 5: 1829255-1835194 bp 6 RT 6: 1903956-1909271 bp 7 RT 7: 4051173-4056323 bp 8 RT 8: 4129362-4135979 bp Neighborhood of RT #1 [126439, 131971] PRK02830 nqrF RVT-GII GIIM Trypsin_2 Neighborhood of RT #2 [641065, 644745] DctM PBP2_TRAP_SBP_like_1 RVT-GII GIIM PBP2_TRAP_SBP_like_1 Neighborhood of RT #3 [1320985, 1326326] RVT-GII GIIM AbiTii PepSY_TM Neighborhood of RT #4 [1343198, 1351666] PRK11618 COG3940 RVT-GII GIIM Glyco_hydro_127 DUF4986 Neighborhood of RT #5 [1829255, 1835262] Tra5 RVT-UG15 Tar DUF1097 Neighborhood of RT #6 [1903956, 1909285] TauE GSDH RVT-GII GIIM InsE Neighborhood of RT #7 [4051173, 4056328] RVT-GII GIIM PRK13960 Neighborhood of RT #8 [4129362, 4135984] groES groEL RVT-Retrons decarb_PcaC DUF2999 Feature: gene Location: 126439-127047 bp Ori: SUI59179.1 Gene: nqrE_1 Feature: domain Description: PRK02830 Location: 126442-127045 bp Feature: domain Description: PRK02 830 Location: 12 6442 -12 7045 bp Feature: gene Location: 127123-128340 bp Ori: SUI59181.1 Gene: nqrF_1 Feature: domain Description: nqrF Location: 127132-128338 bp Feature: domain Description: nqrF Location: 12 7132 -12 8338 bp Feature: gene Location: 129439-130788 bp Ori: SUI59184.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129721-130339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 972 1-130339 bp Feature: domain Description: GIIM Note: maturase Location: 130387-130591 bp Feature: domain Description: GIIM Note: maturase Location: 130387-130591 bp Feature: gene Location: 130848-131618 bp Ori: SUI59185.1 Feature: domain Description: Trypsin_2 Location: 130968-131310 bp Feature: domain Description: Trypsin_2 Location: 130968-131310 bp Feature: gene Location: 131669-131971 bp Feature: gene Location: 641065-641721 bp Ori: SUI62731.1 Gene: yiaM Feature: domain Description: DctM Location: 641068-641659 bp Feature: domain Description: DctM Location: 641068-641659 bp Feature: gene Location: 641779-642567 bp Ori: SUI62732.1 Gene: dctP_1 Feature: domain Description: PBP2_TRAP_SBP_like_1 Location: 641800-642550 bp Feature: domain Description: PBP2 _TRAP_SBP_like_1 Location: 641800-642 550 bp Feature: gene Location: 643064-644413 bp Ori: SUI62733.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643346-643964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643346-643964 bp Feature: domain Description: GIIM Note: maturase Location: 644012-644216 bp Feature: domain Description: GIIM Note: maturase Location: 644012 -6442 16 bp Feature: gene Location: 644473-644745 bp Ori: SUI62734.1 Gene: dctP_2 Feature: domain Description: PBP2_TRAP_SBP_like_1 Location: 644590-644728 bp Feature: domain Description: PBP2 _TRAP_SBP_like_1 Location: 644590-64472 8 bp Feature: gene Location: 1320985-1321458 bp Feature: gene Location: 1321644-1321988 bp Feature: gene Location: 1322086-1323435 bp Ori: SUI69392.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1322368-1322986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 2 368-132 2 986 bp Feature: domain Description: GIIM Note: maturase Location: 1323034-1323238 bp Feature: domain Description: GIIM Note: maturase Location: 132 3034-132 32 38 bp Feature: gene Location: 1324059-1324976 bp Ori: SUI69419.1 Feature: domain Description: AbiTii Location: 1324065-1324596 bp Feature: domain Description: AbiTii Location: 132 4065-132 4596 bp Feature: gene Location: 1325211-1326326 bp Ori: SUI69426.1 Feature: domain Description: PepSY_TM Location: 1325235-1326291 bp Feature: domain Description: PepSY_TM Location: 132 52 35-132 62 91 bp Feature: gene Location: 1343198-1344160 bp Ori: SUI69634.1 Gene: yjfF_1 Feature: domain Description: PRK11618 Location: 1343204-1344140 bp Feature: domain Description: PRK11618 Location: 13432 04-1344140 bp Feature: gene Location: 1344135-1345322 bp Ori: SUI69645.1 Feature: domain Description: COG3940 Location: 1344384-1345308 bp Feature: domain Description: COG3940 Location: 1344384-1345308 bp Feature: gene Location: 1346593-1347942 bp Ori: SUI69730.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1346875-1347493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1346875-1347493 bp Feature: domain Description: GIIM Note: maturase Location: 1347541-1347745 bp Feature: domain Description: GIIM Note: maturase Location: 1347541-1347745 bp Feature: gene Location: 1348032-1348403 bp Feature: gene Location: 1349288-1351666 bp Ori: SUI69830.1 Feature: domain Description: Glyco_hydro_127 Location: 1349369-1350911 bp Feature: domain Description: Glyco_hydro_12 7 Location: 1349369-1350911 bp Feature: domain Description: DUF4986 Location: 1350953-1351175 bp Feature: domain Description: DUF4986 Location: 1350953-1351175 bp Feature: gene Location: 1829255-1830097 bp Ori: SUI74085.1 Feature: domain Description: Tra5 Location: 1829324-1829936 bp Feature: domain Description: Tra5 Location: 182 932 4-182 9936 bp Feature: gene Location: 1830281-1830454 bp Feature: gene Location: 1830553-1832193 bp Ori: SUI74118.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1830952-1831345 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1830952 -1831345 bp Feature: gene Location: 1833212-1834666 bp Ori: SUI74122.1 Gene: mcp4_4 Feature: domain Description: Tar Location: 1833395-1834655 bp Feature: domain Description: Tar Location: 1833395-1834655 bp Feature: gene Location: 1834771-1835262 bp Ori: SUI74130.1 Gene: ycdZ Feature: domain Description: DUF1097 Location: 1834795-1835194 bp Feature: domain Description: DUF1097 Location: 1834795-1835194 bp Feature: gene Location: 1903956-1904717 bp Ori: SUI74876.1 Feature: domain Description: TauE Location: 1903974-1904700 bp Feature: domain Description: TauE Location: 1903974-1904700 bp Feature: gene Location: 1904853-1906004 bp Ori: SUI74883.1 Gene: yliI Feature: domain Description: GSDH Location: 1904994-1905987 bp Feature: domain Description: GSDH Location: 1904994-1905987 bp Feature: gene Location: 1906875-1908224 bp Ori: SUI74892.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907157-1907775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907157-1907775 bp Feature: domain Description: GIIM Note: maturase Location: 1907823-1908027 bp Feature: domain Description: GIIM Note: maturase Location: 190782 3-190802 7 bp Feature: gene Location: 1908306-1908848 bp Feature: gene Location: 1908974-1909285 bp Ori: SUI74930.1 Feature: domain Description: InsE Location: 1908998-1909271 bp Feature: domain Description: InsE Location: 1908998-19092 71 bp Feature: gene Location: 4051173-4051295 bp Feature: gene Location: 4051298-4051531 bp Feature: gene Location: 4052151-4053500 bp Ori: SUI93140.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4052433-4053051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4052 433-4053051 bp Feature: domain Description: GIIM Note: maturase Location: 4053099-4053303 bp Feature: domain Description: GIIM Note: maturase Location: 4053099-4053303 bp Feature: gene Location: 4053582-4053980 bp Feature: gene Location: 4055225-4056328 bp Ori: SUI93146.1 Gene: purC Feature: domain Description: PRK13960 Location: 4055228-4056323 bp Feature: domain Description: PRK13960 Location: 40552 2 8-405632 3 bp Feature: gene Location: 4129362-4129652 bp Ori: SUI93449.1 Gene: groS Feature: domain Description: groES Location: 4129365-4129647 bp Feature: domain Description: groES Location: 412 9365-412 9647 bp Feature: gene Location: 4129710-4131347 bp Ori: SUI93450.1 Gene: groL Feature: domain Description: groEL Location: 4129716-4131333 bp Feature: domain Description: groEL Location: 412 9716-4131333 bp Feature: gene Location: 4133268-4134203 bp Ori: SUI93451.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4133370-4133964 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4133370-4133964 bp Feature: gene Location: 4135217-4135600 bp Ori: SUI93452.1 Feature: domain Description: decarb_PcaC Location: 4135226-4135583 bp Feature: domain Description: decarb_PcaC Location: 41352 2 6-4135583 bp Feature: gene Location: 4135733-4135984 bp Ori: SUI93453.1 Feature: domain Description: DUF2999 Location: 4135736-4135979 bp Feature: domain Description: DUF2 999 Location: 4135736-4135979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02830 (Na(+)-translocating NADH-quinone reductase subunit E; Provisional), nqrF (TIGR01941), RVT-GII, GIIM (pfam08388), Trypsin_2 (pfam13365), DctM (pfam06808), PBP2_TRAP_SBP_like_1 (cd13674), AbiTii (pfam18864), PepSY_TM (pfam03929), PRK11618 (inner membrane ABC transporter permease protein YjfF; Provisional)
COG3940 (Beta-xylosidase, GH43 family ), Glyco_hydro_127 (pfam07944), DUF4986 (pfam16375), Tra5 (COG2801), RVT-UG15, Tar (COG0840), DUF1097 (pfam06496), TauE (pfam01925), GSDH (pfam07995), InsE (COG2963)
PRK13960 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional), groES (PRK14533), groEL (PRK12852), RVT-Retrons, decarb_PcaC (TIGR02425), DUF2999 (pfam11212)

Seq: UGYV01000004.1 Shewanella putrefaciens strain NCTC10736 genome assembly, contig: ERS1066615SCcontig000004, whole genome shotgun sequence (294682 bp)
Overview 1 RT 1: 188210-200209 bp Neighborhood of RT #1 [188210, 200209] TolC RVT_N RVT-GII GIIM umuC PRK10276 TAS_TAS_TAS_TIGR02293 RVT-GII GIIM Feature: gene Location: 188210-189559 bp Ori: SUJ09559.1 Gene: czcC_2 Feature: domain Description: TolC Location: 188348-189500 bp Feature: domain Description: TolC Location: 1883 48-189500 bp Feature: gene Location: 189635-189991 bp Feature: gene Location: 190644-192116 bp Ori: SUJ09567.1 Gene: ltrA_7 Feature: domain Description: RVT_N Location: 190692-190935 bp Feature: domain Description: RVT_N Location: 190692-19093 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190980-191607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190980-191607 bp Feature: domain Description: GIIM Note: maturase Location: 191664-191892 bp Feature: domain Description: GIIM Note: maturase Location: 191664-191892 bp Feature: gene Location: 193156-194412 bp Ori: SUJ09571.1 Gene: umuC_3 Feature: domain Description: umuC Location: 193159-194407 bp Feature: domain Description: umuC Location: 193 159-194407 bp Feature: gene Location: 194413-194634 bp Ori: SUJ09576.1 Feature: domain Description: PRK10276 Location: 194437-194599 bp Feature: domain Description: PRK10276 Location: 19443 7-194599 bp Feature: gene Location: 196211-196633 bp Ori: SUJ09594.1 Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 196256-196625 bp Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 196256-196625 bp Feature: gene Location: 196728-196898 bp Feature: gene Location: 197634-198983 bp Ori: SUJ09606.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197916-198534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197916-19853 4 bp Feature: domain Description: GIIM Note: maturase Location: 198582-198786 bp Feature: domain Description: GIIM Note: maturase Location: 198582-198786 bp Feature: gene Location: 199065-199841 bp Feature: gene Location: 199901-200209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TolC (COG1538), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), TAS_TAS_TAS_TIGR02293