myRT

myRT report for GCA_900457245.1_58075_F01

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Seq: UAUR01000003.1 Shigella boydii strain NCTC8576 genome assembly, contig: ERS1932653SCcontig000003, whole genome shotgun sequence (2732475 bp)
Overview 1 RT 1: 825295-830898 bp Neighborhood of RT #1 [825295, 831269] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Macro_Appr_pase Feature: gene Location: 825295-826881 bp Feature: domain Description: prfC Location: 825313-826879 bp Feature: domain Description: prfC Location: 82531 3-826879 bp Feature: gene Location: 827101-827361 bp Feature: domain Description: PRK10597 Location: 827104-827344 bp Feature: domain Description: PRK1 0597 Location: 8271 04-827344 bp Feature: gene Location: 827721-829325 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 828012-828603 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82801 2-828603 bp Feature: domain Description: TIR_2 Location: 828930-829218 bp Feature: domain Description: TIR_2 Location: 828930-82921 8 bp Feature: gene Location: 829771-830355 bp Feature: domain Description: Caudo_TAP Location: 829987-830344 bp Feature: domain Description: Caudo_TAP Location: 829987-830344 bp Feature: gene Location: 830364-831269 bp Feature: domain Description: Macro_Appr_pase Location: 830382-830898 bp Feature: domain Description: Macro_Appr_pase Location: 830382-830898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676), Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: UAUR01000008.1 Shigella boydii strain NCTC8576 genome assembly, contig: ERS1932653SCcontig000008, whole genome shotgun sequence (225758 bp)
Overview 1 RT 1: 21707-25034 bp 2 RT 2: 98371-101669 bp Neighborhood of RT #1 [21707, 25048] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #2 [98371, 101689] PHA02517 InsE RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 21707-22354 bp Feature: domain Description: PHA02517 Location: 21710-22352 bp Feature: domain Description: PHA02 517 Location: 2 1710-2 2 352 bp Feature: gene Location: 22448-22579 bp Feature: domain Description: DDE_Tnp_IS66 Location: 22460-22553 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 2 460-2 2 553 bp Feature: gene Location: 23057-24274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23243-23897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 43-2 3897 bp Feature: domain Description: GIIM Note: maturase Location: 23975-24197 bp Feature: domain Description: GIIM Note: maturase Location: 2 3975-2 4197 bp Feature: gene Location: 24390-24536 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 24402-24513 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 4402 -2 4513 bp Feature: gene Location: 24563-25048 bp Feature: domain Description: COG3547 Location: 24581-25034 bp Feature: domain Description: COG3547 Location: 2 4581-2 5034 bp Feature: gene Location: 98371-99258 bp Feature: domain Description: PHA02517 Location: 98431-99256 bp Feature: domain Description: PHA02 517 Location: 98431-992 56 bp Feature: gene Location: 99258-99584 bp Feature: domain Description: InsE Location: 99261-99582 bp Feature: domain Description: InsE Location: 992 61-99582 bp Feature: gene Location: 99636-100331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99936-100329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99936-10032 9 bp Feature: gene Location: 100344-100565 bp Feature: domain Description: Tra5 Location: 100356-100548 bp Feature: domain Description: Tra5 Location: 100356-100548 bp Feature: gene Location: 100940-101689 bp Feature: domain Description: PAP2_acid_phosphatase Location: 101015-101669 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 101015-101669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397), InsE (COG2963)