myRT

myRT report for GCA_900457365.1_35377_B01

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Seq: UGYW01000002.1 Sphingobacterium spiritivorum strain NCTC11388 genome assembly, contig: ERS636086SCcontig000002, whole genome shotgun sequence (4680540 bp)
Overview 1 RT 1: 541215-548144 bp 2 RT 2: 2595940-2602886 bp 3 RT 3: 4101939-4106361 bp Neighborhood of RT #1 [541215, 548191] Bac_Flav_CT_J DUF4141 VirB5 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Neighborhood of RT #2 [2595940, 2602933] Bac_Flav_CT_J DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Neighborhood of RT #3 [4101939, 4106483] DUF3037 RVT-Retrons Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 541215-542207 bp Feature: domain Description: Bac_Flav_CT_J Location: 541221-542187 bp Feature: domain Description: Bac_Flav_CT_J Location: 541 221 -5421 87 bp Feature: gene Location: 542211-542843 bp Feature: domain Description: DUF4141 Location: 542226-542382 bp Feature: domain Description: DUF41 41 Location: 542226-542382 bp Feature: domain Description: VirB5 Location: 542520-542742 bp Feature: domain Description: VirB5 Location: 542520-542742 bp Feature: gene Location: 543104-544978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543428-544250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543428-544250 bp Feature: domain Description: Intron_maturas2 Location: 544379-544601 bp Feature: domain Description: Intron_maturas2 Location: 544379-544601 bp Feature: domain Description: HNHc Note: nucleases Location: 544781-544949 bp Feature: domain Description: HNHc Note: nucleases Location: 544781 -544949 bp Feature: gene Location: 545469-547862 bp Feature: domain Description: Bac_Flav_CT_G Location: 545472-547854 bp Feature: domain Description: Bac_Flav_CT_G Location: 545472-547854 bp Feature: gene Location: 547859-548191 bp Feature: domain Description: DUF4133 Location: 547877-548144 bp Feature: domain Description: DUF41 33 Location: 547877-5481 44 bp Feature: gene Location: 2595940-2596935 bp Feature: domain Description: Bac_Flav_CT_J Location: 2595946-2596912 bp Feature: domain Description: Bac_Flav_CT_J Location: 2595946-259691 2 bp Feature: gene Location: 2596938-2597570 bp Feature: domain Description: DUF4141 Location: 2596956-2597109 bp Feature: domain Description: DUF41 41 Location: 2596956-25971 09 bp Feature: gene Location: 2597846-2599720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2598170-2598992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25981 70-2598992 bp Feature: domain Description: Intron_maturas2 Location: 2599124-2599343 bp Feature: domain Description: Intron_maturas2 Location: 25991 24-2599343 bp Feature: domain Description: HNHc Note: nucleases Location: 2599523-2599691 bp Feature: domain Description: HNHc Note: nucleases Location: 2599523-2599691 bp Feature: gene Location: 2600211-2602604 bp Feature: domain Description: Bac_Flav_CT_G Location: 2600214-2602596 bp Feature: domain Description: Bac_Flav_CT_G Location: 260021 4-2602596 bp Feature: gene Location: 2602601-2602933 bp Feature: domain Description: DUF4133 Location: 2602619-2602886 bp Feature: domain Description: DUF41 33 Location: 260261 9-2602886 bp Feature: gene Location: 4101939-4102820 bp Feature: gene Location: 4102831-4103376 bp Feature: domain Description: DUF3037 Location: 4102852-4103050 bp Feature: domain Description: DUF3037 Location: 41 02852-41 03050 bp Feature: gene Location: 4103569-4104618 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4103794-4104364 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41 03794-41 04364 bp Feature: gene Location: 4104702-4104848 bp Feature: gene Location: 4105164-4106483 bp Feature: domain Description: Phage_int_SAM_5 Location: 4105476-4105779 bp Feature: domain Description: Phage_int_SAM_5 Location: 41 05476-41 05779 bp Feature: domain Description: INTN1_C_like Location: 4105926-4106361 bp Feature: domain Description: INTN1 _C_like Location: 41 05926-41 06361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), DUF4141 (pfam13605), VirB5 (TIGR02791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571), DUF3037 (pfam11236), RVT-Retrons
Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)