myRT

myRT report for GCA_900457465.1_42552_G01

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Seq: UAUU01000011.1 Sphingobacterium multivorum strain NCTC11343 genome assembly, contig: ERS950467SCcontig000011, whole genome shotgun sequence (2127860 bp)
Overview 1 RT 1: 540923-544411 bp 2 RT 2: 554674-560049 bp 3 RT 3: 956959-962167 bp Neighborhood of RT #1 [540923, 544411] LZ_Tnp_IS66 zf-IS66 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [554674, 560384] DUF3883 RVT-GII GIIM PRK14083 Neighborhood of RT #3 [956959, 962490] IstB_IS21 RVT-Retrons HATPase_c_3 HSDR_N_2 Feature: gene Location: 540923-541477 bp Feature: domain Description: LZ_Tnp_IS66 Location: 541004-541220 bp Feature: domain Description: LZ_Tnp_IS66 Location: 541 004-541 220 bp Feature: domain Description: zf-IS66 Location: 541250-541340 bp Feature: domain Description: zf-IS66 Location: 541 250-541 340 bp Feature: gene Location: 541564-541779 bp Feature: gene Location: 541995-543245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542199-542856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5421 99-542856 bp Feature: domain Description: GIIM Note: maturase Location: 542940-543162 bp Feature: domain Description: GIIM Note: maturase Location: 542940-5431 62 bp Feature: gene Location: 543311-544276 bp Feature: domain Description: DDE_Tnp_IS66 Location: 543335-544121 bp Feature: domain Description: DDE_Tnp_IS66 Location: 543335-5441 21 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 544157-544250 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5441 57-544250 bp Feature: gene Location: 544277-544411 bp Feature: gene Location: 554674-554931 bp Feature: domain Description: DUF3883 Location: 554680-554854 bp Feature: domain Description: DUF3883 Location: 554680-554854 bp Feature: gene Location: 555133-555348 bp Feature: gene Location: 555564-556814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555768-556425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555768-556425 bp Feature: domain Description: GIIM Note: maturase Location: 556509-556731 bp Feature: domain Description: GIIM Note: maturase Location: 556509-556731 bp Feature: gene Location: 556852-559563 bp Feature: gene Location: 559668-560384 bp Feature: domain Description: PRK14083 Location: 559737-560049 bp Feature: domain Description: PRK1 4083 Location: 559737-560049 bp Feature: gene Location: 956959-957534 bp Feature: domain Description: IstB_IS21 Location: 956998-957499 bp Feature: domain Description: IstB_IS21 Location: 956998-957499 bp Feature: gene Location: 957548-957838 bp Feature: gene Location: 957879-958970 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 958098-958728 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 958098-958728 bp Feature: gene Location: 959148-960395 bp Feature: gene Location: 960457-962490 bp Feature: domain Description: HATPase_c_3 Location: 960520-960919 bp Feature: domain Description: HATPase_c_3 Location: 960520-96091 9 bp Feature: domain Description: HSDR_N_2 Location: 962014-962167 bp Feature: domain Description: HSDR_N_2 Location: 96201 4-9621 67 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), DUF3883 (pfam13020), PRK14083 (HSP90 family protein; Provisional), IstB_IS21 (pfam01695), RVT-Retrons
HATPase_c_3 (pfam13589), HSDR_N_2 (pfam13588)