myRT

myRT report for GCA_900457745.1_40574_G02

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Seq: UHAI01000002.1 Staphylococcus aureus strain NCTC7972 genome assembly, contig: ERS806188SCcontig000002, whole genome shotgun sequence (2724846 bp)
Overview 1 RT 1: 69063-73559 bp 2 RT 2: 155446-160517 bp 3 RT 3: 166416-174205 bp 4 RT 4: 581513-586864 bp 5 RT 5: 608966-614492 bp 6 RT 6: 643368-649879 bp 7 RT 7: 997312-1001956 bp 8 RT 8: 1102070-1107150 bp 9 RT 9: 1172091-1177183 bp 10 RT 10: 1249384-1254265 bp 11 RT 11: 1464142-1471424 bp 12 RT 12: 1939069-1944328 bp 13 RT 13: 1995487-1999220 bp 14 RT 14: 2368937-2372911 bp 15 RT 15: 2445277-2450370 bp 16 RT 16: 2521409-2525848 bp 17 RT 17: 2567469-2571474 bp Neighborhood of RT #1 [69063, 73570] transald_staph RVT-GII GIIM YdiL YdiL Neighborhood of RT #2 [155446, 160522] PRK00180 RVT-GII GIIM UspA Ald Neighborhood of RT #3 [166416, 174213] DnaE RVT-GII GIIM PRK07232 PRK05654 Neighborhood of RT #4 [581513, 586864] PRK06349 PRK09034 RVT-GII GIIM Neighborhood of RT #5 [608966, 614524] MiaA PldB RVT-GII GIIM GlpA Neighborhood of RT #6 [643368, 649881] RnjA Pnp RVT-GII GIIM rpsO Neighborhood of RT #7 [997312, 1001958] TVP38 RVT-GII GIIM pgi Neighborhood of RT #8 [1102070, 1107161] tpiA PRK13962 RVT-GII GIIM GapA Neighborhood of RT #9 [1172091, 1177191] RhaT QueFC RVT-GII GIIM PTR2 Neighborhood of RT #10 [1249384, 1254270] Aes RVT-GII GIIM YkvI Neighborhood of RT #11 [1464142, 1471438] trehalose_treC PTS-IIBC-Tre RVT-GII GIIM GOGAT_sm_gam Neighborhood of RT #12 [1939069, 1944336] YbcJ RVT-GII GIIM PRK05643 dnaA Neighborhood of RT #13 [1995487, 1999306] RVT-GII GIIM RutF Neighborhood of RT #14 [2368937, 2372940] DUF2871 RVT-GII GIIM TrxB Acetyltransf_10 Neighborhood of RT #15 [2445277, 2450393] Tic20 RVT-GII GIIM PRK06753 Octopine_DH antiport_nhaC Neighborhood of RT #16 [2521409, 2525848] HAD_SPP RVT-GII GIIM GT4_GtfA-like Neighborhood of RT #17 [2567469, 2571474] ParA RVT-GII GIIM Feature: gene Location: 69063-69776 bp Feature: domain Description: transald_staph Location: 69066-69774 bp Feature: domain Description: transald_staph Location: 69066-69774 bp Feature: gene Location: 70067-70276 bp Feature: gene Location: 70328-71623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70553-71168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70553-71 1 68 bp Feature: domain Description: GIIM Note: maturase Location: 71228-71462 bp Feature: domain Description: GIIM Note: maturase Location: 71 228-71 462 bp Feature: gene Location: 72148-72768 bp Feature: domain Description: YdiL Location: 72211-72757 bp Feature: domain Description: YdiL Location: 7221 1 -72757 bp Feature: gene Location: 72935-73570 bp Feature: domain Description: YdiL Location: 72992-73559 bp Feature: domain Description: YdiL Location: 72992-73559 bp Feature: gene Location: 155446-156648 bp Feature: domain Description: PRK00180 Location: 155458-156631 bp Feature: domain Description: PRK001 80 Location: 1 55458-1 56631 bp Feature: gene Location: 156951-157160 bp Feature: gene Location: 157212-158507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157437-158052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 57437-1 58052 bp Feature: domain Description: GIIM Note: maturase Location: 158112-158346 bp Feature: domain Description: GIIM Note: maturase Location: 1 581 1 2-1 58346 bp Feature: gene Location: 158763-159263 bp Feature: domain Description: UspA Location: 158772-159198 bp Feature: domain Description: UspA Location: 1 58772-1 591 98 bp Feature: gene Location: 159356-160522 bp Feature: domain Description: Ald Location: 159407-160517 bp Feature: domain Description: Ald Location: 1 59407-1 6051 7 bp Feature: gene Location: 166416-169613 bp Feature: domain Description: DnaE Location: 166425-169587 bp Feature: domain Description: DnaE Location: 1 66425-1 69587 bp Feature: gene Location: 169924-170133 bp Feature: gene Location: 170185-171480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170410-171025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7041 0-1 71 025 bp Feature: domain Description: GIIM Note: maturase Location: 171085-171319 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 085-1 71 31 9 bp Feature: gene Location: 171932-173161 bp Feature: domain Description: PRK07232 Location: 171938-173144 bp Feature: domain Description: PRK07232 Location: 1 71 938-1 731 44 bp Feature: gene Location: 173356-174213 bp Feature: domain Description: PRK05654 Location: 173371-174205 bp Feature: domain Description: PRK05654 Location: 1 73371 -1 74205 bp Feature: gene Location: 581513-582793 bp Feature: domain Description: PRK06349 Location: 581516-582560 bp Feature: domain Description: PRK06349 Location: 581 51 6-582560 bp Feature: gene Location: 582984-584366 bp Feature: domain Description: PRK09034 Location: 582987-584331 bp Feature: domain Description: PRK09034 Location: 582987-584331 bp Feature: gene Location: 584443-585738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584668-585283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584668-585283 bp Feature: domain Description: GIIM Note: maturase Location: 585343-585577 bp Feature: domain Description: GIIM Note: maturase Location: 585343-585577 bp Feature: gene Location: 585790-585999 bp Feature: gene Location: 586289-586864 bp Feature: gene Location: 608966-609913 bp Feature: domain Description: MiaA Location: 608993-609899 bp Feature: domain Description: MiaA Location: 608993-609899 bp Feature: gene Location: 609919-610836 bp Feature: domain Description: PldB Location: 609928-610828 bp Feature: domain Description: PldB Location: 609928-61 0828 bp Feature: gene Location: 611003-612298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 611228-611843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 1 228-61 1 843 bp Feature: domain Description: GIIM Note: maturase Location: 611903-612137 bp Feature: domain Description: GIIM Note: maturase Location: 61 1 903-61 21 37 bp Feature: gene Location: 612350-612559 bp Feature: gene Location: 612851-614524 bp Feature: domain Description: GlpA Location: 612875-614492 bp Feature: domain Description: GlpA Location: 61 2875-61 4492 bp Feature: gene Location: 643368-645092 bp Feature: domain Description: RnjA Location: 643434-645081 bp Feature: domain Description: RnjA Location: 643434-645081 bp Feature: gene Location: 645277-647373 bp Feature: domain Description: Pnp Location: 645289-647368 bp Feature: domain Description: Pnp Location: 645289-647368 bp Feature: gene Location: 647763-649058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647988-648603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 647988-648603 bp Feature: domain Description: GIIM Note: maturase Location: 648663-648897 bp Feature: domain Description: GIIM Note: maturase Location: 648663-648897 bp Feature: gene Location: 649110-649319 bp Feature: gene Location: 649612-649881 bp Feature: domain Description: rpsO Location: 649615-649879 bp Feature: domain Description: rpsO Location: 64961 5-649879 bp Feature: gene Location: 997312-997887 bp Feature: domain Description: TVP38 Location: 997318-997882 bp Feature: domain Description: TVP38 Location: 99731 8-997882 bp Feature: gene Location: 998189-998374 bp Feature: gene Location: 998706-1000001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998931-999546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998931 -999546 bp Feature: domain Description: GIIM Note: maturase Location: 999606-999840 bp Feature: domain Description: GIIM Note: maturase Location: 999606-999840 bp Feature: gene Location: 1000053-1000262 bp Feature: gene Location: 1000627-1001958 bp Feature: domain Description: pgi Location: 1000630-1001956 bp Feature: domain Description: pgi Location: 1 000630-1 001 956 bp Feature: gene Location: 1102070-1102930 bp Feature: domain Description: tpiA Location: 1102175-1102922 bp Feature: domain Description: tpiA Location: 1 1 021 75-1 1 02922 bp Feature: gene Location: 1102953-1104143 bp Feature: domain Description: PRK13962 Location: 1102956-1104138 bp Feature: domain Description: PRK1 3962 Location: 1 1 02956-1 1 041 38 bp Feature: gene Location: 1104251-1105546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1104476-1105091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 04476-1 1 05091 bp Feature: domain Description: GIIM Note: maturase Location: 1105151-1105385 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 051 51 -1 1 05385 bp Feature: gene Location: 1105598-1105807 bp Feature: gene Location: 1106151-1107161 bp Feature: domain Description: GapA Location: 1106160-1107150 bp Feature: domain Description: GapA Location: 1 1 061 60-1 1 071 50 bp Feature: gene Location: 1172091-1172957 bp Feature: domain Description: RhaT Location: 1172106-1172916 bp Feature: domain Description: RhaT Location: 1 1 721 06-1 1 7291 6 bp Feature: gene Location: 1172977-1173477 bp Feature: domain Description: QueFC Location: 1172998-1173433 bp Feature: domain Description: QueFC Location: 1 1 72998-1 1 73433 bp Feature: gene Location: 1173562-1174857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1173787-1174402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 73787-1 1 74402 bp Feature: domain Description: GIIM Note: maturase Location: 1174462-1174696 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 74462-1 1 74696 bp Feature: gene Location: 1174909-1175118 bp Feature: gene Location: 1175686-1177191 bp Feature: domain Description: PTR2 Location: 1175704-1177183 bp Feature: domain Description: PTR2 Location: 1 1 75704-1 1 771 83 bp Feature: gene Location: 1249384-1249812 bp Feature: gene Location: 1250140-1251183 bp Feature: domain Description: Aes Location: 1250188-1251094 bp Feature: domain Description: Aes Location: 1 2501 88-1 251 094 bp Feature: gene Location: 1251311-1252606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1251536-1252151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 251 536-1 2521 51 bp Feature: domain Description: GIIM Note: maturase Location: 1252211-1252445 bp Feature: domain Description: GIIM Note: maturase Location: 1 25221 1 -1 252445 bp Feature: gene Location: 1252658-1252867 bp Feature: gene Location: 1253203-1254270 bp Feature: domain Description: YkvI Location: 1253218-1254265 bp Feature: domain Description: YkvI Location: 1 25321 8-1 254265 bp Feature: gene Location: 1464142-1465782 bp Feature: domain Description: trehalose_treC Location: 1464163-1465711 bp Feature: domain Description: trehalose_treC Location: 1 4641 63-1 46571 1 bp Feature: gene Location: 1465846-1467273 bp Feature: domain Description: PTS-IIBC-Tre Location: 1465864-1467235 bp Feature: domain Description: PTS-IIBC-Tre Location: 1 465864-1 467235 bp Feature: gene Location: 1467749-1469044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1467974-1468589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 467974-1 468589 bp Feature: domain Description: GIIM Note: maturase Location: 1468649-1468883 bp Feature: domain Description: GIIM Note: maturase Location: 1 468649-1 468883 bp Feature: gene Location: 1469096-1469305 bp Feature: gene Location: 1469975-1471438 bp Feature: domain Description: GOGAT_sm_gam Location: 1469990-1471424 bp Feature: domain Description: GOGAT_sm_gam Location: 1 469990-1 471 424 bp Feature: gene Location: 1939069-1939314 bp Feature: domain Description: YbcJ Location: 1939090-1939270 bp Feature: domain Description: YbcJ Location: 1 939090-1 939270 bp Feature: gene Location: 1939924-1940133 bp Feature: gene Location: 1940185-1941480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1940410-1941025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 94041 0-1 941 025 bp Feature: domain Description: GIIM Note: maturase Location: 1941085-1941319 bp Feature: domain Description: GIIM Note: maturase Location: 1 941 085-1 941 31 9 bp Feature: gene Location: 1941564-1942697 bp Feature: domain Description: PRK05643 Location: 1941570-1942692 bp Feature: domain Description: PRK05643 Location: 1 941 570-1 942692 bp Feature: gene Location: 1942975-1944336 bp Feature: domain Description: dnaA Location: 1942984-1944328 bp Feature: domain Description: dnaA Location: 1 942984-1 944328 bp Feature: gene Location: 1995487-1996161 bp Feature: gene Location: 1996267-1996476 bp Feature: gene Location: 1996528-1997823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1996753-1997368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 996753-1 997368 bp Feature: domain Description: GIIM Note: maturase Location: 1997428-1997662 bp Feature: domain Description: GIIM Note: maturase Location: 1 997428-1 997662 bp Feature: gene Location: 1997872-1998300 bp Feature: gene Location: 1998614-1999306 bp Feature: domain Description: RutF Location: 1998629-1999220 bp Feature: domain Description: RutF Location: 1 998629-1 999220 bp Feature: gene Location: 2368937-2369368 bp Feature: domain Description: DUF2871 Location: 2368940-2369327 bp Feature: domain Description: DUF2871 Location: 2368940-2369327 bp Feature: gene Location: 2369682-2369891 bp Feature: gene Location: 2369943-2371238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2370168-2370783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23701 68-2370783 bp Feature: domain Description: GIIM Note: maturase Location: 2370843-2371077 bp Feature: domain Description: GIIM Note: maturase Location: 2370843-2371 077 bp Feature: gene Location: 2371400-2372503 bp Feature: domain Description: TrxB Location: 2371472-2372423 bp Feature: domain Description: TrxB Location: 2371 472-2372423 bp Feature: gene Location: 2372539-2372940 bp Feature: domain Description: Acetyltransf_10 Location: 2372650-2372911 bp Feature: domain Description: Acetyltransf_1 0 Location: 2372650-237291 1 bp Feature: gene Location: 2445277-2445699 bp Feature: domain Description: Tic20 Location: 2445280-2445697 bp Feature: domain Description: Tic20 Location: 2445280-2445697 bp Feature: gene Location: 2446127-2446336 bp Feature: gene Location: 2446388-2447683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2446613-2447228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 244661 3-2447228 bp Feature: domain Description: GIIM Note: maturase Location: 2447288-2447522 bp Feature: domain Description: GIIM Note: maturase Location: 2447288-2447522 bp Feature: gene Location: 2447816-2448898 bp Feature: domain Description: PRK06753 Location: 2447819-2447942 bp Feature: domain Description: PRK06753 Location: 244781 9-2447942 bp Feature: domain Description: Octopine_DH Location: 2448377-2448815 bp Feature: domain Description: Octopine_DH Location: 2448377-244881 5 bp Feature: gene Location: 2448993-2450393 bp Feature: domain Description: antiport_nhaC Location: 2449005-2450370 bp Feature: domain Description: antiport_nhaC Location: 2449005-2450370 bp Feature: gene Location: 2521409-2522230 bp Feature: domain Description: HAD_SPP Location: 2521430-2522207 bp Feature: domain Description: HAD_SPP Location: 2521 430-2522207 bp Feature: gene Location: 2522581-2522790 bp Feature: gene Location: 2522842-2524137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2523067-2523682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2523067-2523682 bp Feature: domain Description: GIIM Note: maturase Location: 2523742-2523976 bp Feature: domain Description: GIIM Note: maturase Location: 2523742-2523976 bp Feature: gene Location: 2524332-2525351 bp Feature: domain Description: GT4_GtfA-like Location: 2524398-2525322 bp Feature: domain Description: GT4_GtfA-like Location: 2524398-2525322 bp Feature: gene Location: 2525480-2525848 bp Feature: gene Location: 2567469-2568533 bp Feature: domain Description: ParA Location: 2567805-2568513 bp Feature: domain Description: ParA Location: 2567805-256851 3 bp Feature: gene Location: 2568822-2569031 bp Feature: gene Location: 2569083-2570378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2569308-2569923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2569308-2569923 bp Feature: domain Description: GIIM Note: maturase Location: 2569983-2570217 bp Feature: domain Description: GIIM Note: maturase Location: 2569983-257021 7 bp Feature: gene Location: 2571325-2571474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT transald_staph (TIGR02134), RVT-GII, GIIM (pfam08388), YdiL (COG1266), PRK00180 (acetate kinase A/propionate kinase 2; Reviewed), UspA (COG0589), Ald (COG0686), DnaE (COG0587), PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), PRK05654 (acetyl-CoA carboxylase carboxyltransferase subunit beta)
PRK06349 (homoserine dehydrogenase; Provisional), PRK09034 (aspartate kinase; Reviewed), MiaA (COG0324), PldB (COG2267), GlpA (COG0578), RnjA (COG0595), Pnp (COG1185), rpsO (PRK05626), pgi (PRK14097), TVP38 (COG0398)
tpiA (PRK00042), PRK13962 (bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional), GapA (COG0057), RhaT (TIGR00776), QueFC (COG0780), PTR2 (pfam00854), Aes (COG0657), YkvI (COG3949), trehalose_treC (TIGR02403), PTS-IIBC-Tre (TIGR01992)
GOGAT_sm_gam (TIGR01317), YbcJ (COG2501), PRK05643 (DNA polymerase III subunit beta; Validated), dnaA (PRK14088), RutF (TIGR03615), DUF2871 (pfam11070), TrxB (COG0492), Acetyltransf_10 (pfam13673), Tic20 (COG3296), PRK06753 (hypothetical protein; Provisional)
Octopine_DH (pfam02317), antiport_nhaC (TIGR00931), HAD_SPP (cd02605), GT4_GtfA-like (cd04949), ParA (pfam10609)

Seq: UHAI01000005.1 Staphylococcus aureus strain NCTC7972 genome assembly, contig: ERS806188SCcontig000005, whole genome shotgun sequence (284617 bp)
Overview 1 RT 1: 56518-59363 bp Neighborhood of RT #1 [56518, 59363] RVT-GII GIIM group_II_RT_mat Feature: gene Location: 56518-56940 bp Feature: gene Location: 57614-57757 bp Feature: gene Location: 57806-58852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57809-58397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57809-58397 bp Feature: domain Description: GIIM Note: maturase Location: 58457-58691 bp Feature: domain Description: GIIM Note: maturase Location: 58457-58691 bp Feature: gene Location: 58803-59102 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 58860-59049 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 58860-59049 bp Feature: gene Location: 59154-59363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)