myRT

myRT report for GCA_900457835.1_40853_A01

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Seq: UHAS01000001.1 Staphylococcus aureus strain NCTC6137 genome assembly, contig: ERS806225SCcontig000001, whole genome shotgun sequence (2786976 bp)
Overview 1 RT 1: 428394-435619 bp 2 RT 2: 832392-836222 bp 3 RT 3: 923734-928709 bp 4 RT 4: 1065996-1071370 bp 5 RT 5: 1261125-1266669 bp 6 RT 6: 1277482-1280435 bp 7 RT 7: 1288362-1293480 bp 8 RT 8: 1366548-1371757 bp 9 RT 9: 1766375-1772635 bp 10 RT 10: 2332433-2337547 bp Neighborhood of RT #1 [428394, 435690] GOGAT_sm_gam RVT-GII GIIM PTS-IIBC-Tre trehalose_treC Neighborhood of RT #2 [832392, 836222] Stap_Strp_toxin Stap_Strp_tox_C RVT-GII GIIM SA1633_like Neighborhood of RT #3 [923734, 928714] PBP2_Lactococcal_OppA_like RVT-GII GIIM DppD AppF Neighborhood of RT #4 [1065996, 1071372] RpmF RVT-GII GIIM IsdB NEAT Neighborhood of RT #5 [1261125, 1266683] GlpA RVT-GII GIIM PldB MiaA Neighborhood of RT #6 [1277482, 1280435] RVT-GII GIIM Ntox50 Neighborhood of RT #7 [1288362, 1293713] RVT-GII GIIM PRK09034 PRK06349 Neighborhood of RT #8 [1366548, 1371789] PstC ptsS_2 RVT-GII GIIM CvfB Neighborhood of RT #9 [1766375, 1772637] PRK01565 NifS RVT-GII GIIM EzrA Neighborhood of RT #10 [2332433, 2337549] antiport_nhaC PRK06753 Octopine_DH RVT-GII GIIM Tic20 Feature: gene Location: 428394-429857 bp Feature: domain Description: GOGAT_sm_gam Location: 428409-429843 bp Feature: domain Description: GOGAT_sm_gam Location: 428409-429843 bp Feature: gene Location: 430527-430736 bp Feature: gene Location: 430788-432083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431013-431628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 01 3-431 628 bp Feature: domain Description: GIIM Note: maturase Location: 431688-431922 bp Feature: domain Description: GIIM Note: maturase Location: 431 688-431 922 bp Feature: gene Location: 432559-433986 bp Feature: domain Description: PTS-IIBC-Tre Location: 432577-433948 bp Feature: domain Description: PTS-IIBC-Tre Location: 432577-433948 bp Feature: gene Location: 434050-435690 bp Feature: domain Description: trehalose_treC Location: 434071-435619 bp Feature: domain Description: trehalose_treC Location: 434071 -43561 9 bp Feature: gene Location: 832392-833192 bp Feature: domain Description: Stap_Strp_toxin Location: 832554-832830 bp Feature: domain Description: Stap_Strp_toxin Location: 832554-832830 bp Feature: domain Description: Stap_Strp_tox_C Location: 832866-833175 bp Feature: domain Description: Stap_Strp_tox_C Location: 832866-8331 75 bp Feature: gene Location: 833506-833715 bp Feature: gene Location: 833767-835062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 833992-834607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 833992-834607 bp Feature: domain Description: GIIM Note: maturase Location: 834667-834901 bp Feature: domain Description: GIIM Note: maturase Location: 834667-834901 bp Feature: gene Location: 835139-835696 bp Feature: domain Description: SA1633_like Location: 835271-835688 bp Feature: domain Description: SA1 633_like Location: 835271 -835688 bp Feature: gene Location: 836094-836222 bp Feature: gene Location: 923734-925449 bp Feature: domain Description: PBP2_Lactococcal_OppA_like Location: 923866-925393 bp Feature: domain Description: PBP2_Lactococcal_OppA_like Location: 923866-925393 bp Feature: gene Location: 925724-925933 bp Feature: gene Location: 925985-927280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 926210-926825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92621 0-926825 bp Feature: domain Description: GIIM Note: maturase Location: 926885-927119 bp Feature: domain Description: GIIM Note: maturase Location: 926885-9271 1 9 bp Feature: gene Location: 927369-928355 bp Feature: domain Description: DppD Location: 927384-928329 bp Feature: domain Description: DppD Location: 927384-928329 bp Feature: gene Location: 928358-928714 bp Feature: domain Description: AppF Location: 928364-928709 bp Feature: domain Description: AppF Location: 928364-928709 bp Feature: gene Location: 1065996-1066169 bp Feature: domain Description: RpmF Location: 1065999-1066164 bp Feature: domain Description: RpmF Location: 1 065999-1 0661 64 bp Feature: gene Location: 1066468-1066677 bp Feature: gene Location: 1066729-1068024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066954-1067569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 066954-1 067569 bp Feature: domain Description: GIIM Note: maturase Location: 1067629-1067863 bp Feature: domain Description: GIIM Note: maturase Location: 1 067629-1 067863 bp Feature: gene Location: 1068192-1070117 bp Feature: domain Description: IsdB Location: 1068195-1070115 bp Feature: domain Description: IsdB Location: 1 0681 95-1 0701 1 5 bp Feature: gene Location: 1070320-1071372 bp Feature: domain Description: NEAT Location: 1070323-1071370 bp Feature: domain Description: NEAT Location: 1 070323-1 071 370 bp Feature: gene Location: 1261125-1262798 bp Feature: domain Description: GlpA Location: 1261149-1262766 bp Feature: domain Description: GlpA Location: 1 261 1 49-1 262766 bp Feature: gene Location: 1263090-1263299 bp Feature: gene Location: 1263351-1264646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1263576-1264191 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 263576-1 2641 91 bp Feature: domain Description: GIIM Note: maturase Location: 1264251-1264485 bp Feature: domain Description: GIIM Note: maturase Location: 1 264251 -1 264485 bp Feature: gene Location: 1264813-1265730 bp Feature: domain Description: PldB Location: 1264822-1265722 bp Feature: domain Description: PldB Location: 1 264822-1 265722 bp Feature: gene Location: 1265736-1266683 bp Feature: domain Description: MiaA Location: 1265763-1266669 bp Feature: domain Description: MiaA Location: 1 265763-1 266669 bp Feature: gene Location: 1277482-1277637 bp Feature: gene Location: 1277937-1278146 bp Feature: gene Location: 1278198-1279493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1278423-1279038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 278423-1 279038 bp Feature: domain Description: GIIM Note: maturase Location: 1279098-1279332 bp Feature: domain Description: GIIM Note: maturase Location: 1 279098-1 279332 bp Feature: gene Location: 1279728-1280237 bp Feature: domain Description: Ntox50 Location: 1279929-1280220 bp Feature: domain Description: Ntox50 Location: 1 279929-1 280220 bp Feature: gene Location: 1280244-1280435 bp Feature: gene Location: 1288362-1288937 bp Feature: gene Location: 1289227-1289436 bp Feature: gene Location: 1289488-1290783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1289713-1290328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 28971 3-1 290328 bp Feature: domain Description: GIIM Note: maturase Location: 1290388-1290622 bp Feature: domain Description: GIIM Note: maturase Location: 1 290388-1 290622 bp Feature: gene Location: 1290860-1292242 bp Feature: domain Description: PRK09034 Location: 1290863-1292207 bp Feature: domain Description: PRK09034 Location: 1 290863-1 292207 bp Feature: gene Location: 1292433-1293713 bp Feature: domain Description: PRK06349 Location: 1292436-1293480 bp Feature: domain Description: PRK06349 Location: 1 292436-1 293480 bp Feature: gene Location: 1366548-1367474 bp Feature: domain Description: PstC Location: 1366584-1367469 bp Feature: domain Description: PstC Location: 1 366584-1 367469 bp Feature: gene Location: 1367665-1368648 bp Feature: domain Description: ptsS_2 Location: 1367668-1368535 bp Feature: domain Description: ptsS_2 Location: 1 367668-1 368535 bp Feature: gene Location: 1368939-1370234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1369164-1369779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3691 64-1 369779 bp Feature: domain Description: GIIM Note: maturase Location: 1369839-1370073 bp Feature: domain Description: GIIM Note: maturase Location: 1 369839-1 370073 bp Feature: gene Location: 1370286-1370495 bp Feature: gene Location: 1370887-1371789 bp Feature: domain Description: CvfB Location: 1370902-1371757 bp Feature: domain Description: CvfB Location: 1 370902-1 371 757 bp Feature: gene Location: 1766375-1767529 bp Feature: domain Description: PRK01565 Location: 1766381-1767473 bp Feature: domain Description: PRK01 565 Location: 1 766381 -1 767473 bp Feature: gene Location: 1767598-1768767 bp Feature: domain Description: NifS Location: 1767634-1768759 bp Feature: domain Description: NifS Location: 1 767634-1 768759 bp Feature: gene Location: 1769072-1770367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1769297-1769912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 769297-1 76991 2 bp Feature: domain Description: GIIM Note: maturase Location: 1769972-1770206 bp Feature: domain Description: GIIM Note: maturase Location: 1 769972-1 770206 bp Feature: gene Location: 1770419-1770628 bp Feature: gene Location: 1770943-1772637 bp Feature: domain Description: EzrA Location: 1770949-1772635 bp Feature: domain Description: EzrA Location: 1 770949-1 772635 bp Feature: gene Location: 2332433-2333833 bp Feature: domain Description: antiport_nhaC Location: 2332445-2333810 bp Feature: domain Description: antiport_nhaC Location: 2332445-233381 0 bp Feature: gene Location: 2333928-2335010 bp Feature: domain Description: PRK06753 Location: 2333931-2334054 bp Feature: domain Description: PRK06753 Location: 2333931 -2334054 bp Feature: domain Description: Octopine_DH Location: 2334489-2334927 bp Feature: domain Description: Octopine_DH Location: 2334489-2334927 bp Feature: gene Location: 2335143-2336438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2335368-2335983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2335368-2335983 bp Feature: domain Description: GIIM Note: maturase Location: 2336043-2336277 bp Feature: domain Description: GIIM Note: maturase Location: 2336043-2336277 bp Feature: gene Location: 2336490-2336699 bp Feature: gene Location: 2337127-2337549 bp Feature: domain Description: Tic20 Location: 2337130-2337547 bp Feature: domain Description: Tic20 Location: 23371 30-2337547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GOGAT_sm_gam (TIGR01317), RVT-GII, GIIM (pfam08388), PTS-IIBC-Tre (TIGR01992), trehalose_treC (TIGR02403), Stap_Strp_toxin (pfam01123), Stap_Strp_tox_C (pfam02876), SA1633_like (cl24066), PBP2_Lactococcal_OppA_like (cd08510), DppD (COG0444)
AppF (COG4608), RpmF (COG0333), IsdB (TIGR03657), NEAT (smart00725), GlpA (COG0578), PldB (COG2267), MiaA (COG0324), Ntox50 (pfam15542), PRK09034 (aspartate kinase; Reviewed), PRK06349 (homoserine dehydrogenase; Provisional)
PstC (COG0573), ptsS_2 (TIGR02136), CvfB (COG2996), PRK01565 (thiamine biosynthesis protein ThiI; Provisional), NifS (COG1104), EzrA (pfam06160), antiport_nhaC (TIGR00931), PRK06753 (hypothetical protein; Provisional), Octopine_DH (pfam02317), Tic20 (COG3296)