myRT

myRT report for GCA_900457895.1_40853_B01

Download annotations/find similar RTs

Seq: UHAR01000002.1 Staphylococcus aureus strain NCTC6507 genome assembly, contig: ERS807415SCcontig000002, whole genome shotgun sequence (2841975 bp)
Overview 1 RT 1: 280506-286361 bp 2 RT 2: 460317-467542 bp 3 RT 3: 682437-687323 bp 4 RT 4: 814335-819418 bp 5 RT 5: 1161321-1165004 bp 6 RT 6: 1260333-1266835 bp 7 RT 7: 1295690-1301234 bp 8 RT 8: 1325107-1329361 bp 9 RT 9: 1782594-1790365 bp 10 RT 10: 1796399-1801458 bp 11 RT 11: 1883351-1887856 bp 12 RT 12: 1967007-1971316 bp 13 RT 13: 2313788-2318198 bp 14 RT 14: 2389246-2394360 bp 15 RT 15: 2466699-2470661 bp 16 RT 16: 2778331-2789481 bp Neighborhood of RT #1 [280506, 286363] ABC2_membrane_3 RVT-GII GIIM COG3942 Neighborhood of RT #2 [460317, 467613] GOGAT_sm_gam RVT-GII GIIM PTS-IIBC-Tre trehalose_treC Neighborhood of RT #3 [682437, 687323] YkvI RVT-GII GIIM Aes Neighborhood of RT #4 [814335, 819426] GapA RVT-GII GIIM PRK13962 tpiA Neighborhood of RT #5 [1161321, 1165009] Ycf19 RVT-GII GIIM YlmH DivIVA Neighborhood of RT #6 [1260333, 1266846] rpsO RVT-GII GIIM Pnp RnjA Neighborhood of RT #7 [1295690, 1301248] GlpA RVT-GII GIIM PldB MiaA Neighborhood of RT #8 [1325107, 1329594] group_II_RT_mat RVT-GII GIIM PRK09034 PRK06349 Neighborhood of RT #9 [1782594, 1790391] PRK05654 PRK07232 RVT-GII GIIM DnaE Neighborhood of RT #10 [1796399, 1801475] Ald UspA RVT-GII GIIM PRK00180 Neighborhood of RT #11 [1883351, 1887858] YdiL YdiL RVT-GII GIIM transald_staph Neighborhood of RT #12 [1967007, 1971316] FumC RVT-GII GIIM group_II_RT_mat Neighborhood of RT #13 [2313788, 2318221] GT4_GtfA-like RVT-GII GIIM HAD_SPP Neighborhood of RT #14 [2389246, 2394362] antiport_nhaC PRK06753 Octopine_DH RVT-GII GIIM Tic20 Neighborhood of RT #15 [2466699, 2470702] Acetyltransf_10 TrxB RVT-GII GIIM DUF2871 Neighborhood of RT #16 [2778331, 2789567] secY KxYKxGKxW Bact_lectin MSCRAMM_SdrC MSCRAMM_SdrC MSCRAMM_SdrC MSCRAMM_SdrC Gram_pos_anchor RVT-GII GIIM RutF Feature: gene Location: 280506-281672 bp Feature: domain Description: ABC2_membrane_3 Location: 280557-281640 bp Feature: domain Description: ABC2_membrane_3 Location: 280557-281 640 bp Feature: gene Location: 281970-282179 bp Feature: gene Location: 282231-283526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282456-283071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282456-283071 bp Feature: domain Description: GIIM Note: maturase Location: 283131-283365 bp Feature: domain Description: GIIM Note: maturase Location: 2831 31 -283365 bp Feature: gene Location: 283609-285132 bp Feature: gene Location: 285461-286363 bp Feature: domain Description: COG3942 Location: 285851-286361 bp Feature: domain Description: COG3942 Location: 285851 -286361 bp Feature: gene Location: 460317-461780 bp Feature: domain Description: GOGAT_sm_gam Location: 460332-461766 bp Feature: domain Description: GOGAT_sm_gam Location: 460332-461 766 bp Feature: gene Location: 462450-462659 bp Feature: gene Location: 462711-464006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462936-463551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462936-463551 bp Feature: domain Description: GIIM Note: maturase Location: 463611-463845 bp Feature: domain Description: GIIM Note: maturase Location: 46361 1 -463845 bp Feature: gene Location: 464482-465909 bp Feature: domain Description: PTS-IIBC-Tre Location: 464500-465871 bp Feature: domain Description: PTS-IIBC-Tre Location: 464500-465871 bp Feature: gene Location: 465973-467613 bp Feature: domain Description: trehalose_treC Location: 465994-467542 bp Feature: domain Description: trehalose_treC Location: 465994-467542 bp Feature: gene Location: 682437-683504 bp Feature: domain Description: YkvI Location: 682452-683499 bp Feature: domain Description: YkvI Location: 682452-683499 bp Feature: gene Location: 683840-684049 bp Feature: gene Location: 684101-685396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684326-684941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684326-684941 bp Feature: domain Description: GIIM Note: maturase Location: 685001-685235 bp Feature: domain Description: GIIM Note: maturase Location: 685001 -685235 bp Feature: gene Location: 685524-686567 bp Feature: domain Description: Aes Location: 685572-686478 bp Feature: domain Description: Aes Location: 685572-686478 bp Feature: gene Location: 686895-687323 bp Feature: gene Location: 814335-815345 bp Feature: domain Description: GapA Location: 814344-815334 bp Feature: domain Description: GapA Location: 81 4344-81 5334 bp Feature: gene Location: 815689-815898 bp Feature: gene Location: 815950-817245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 816175-816790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 61 75-81 6790 bp Feature: domain Description: GIIM Note: maturase Location: 816850-817084 bp Feature: domain Description: GIIM Note: maturase Location: 81 6850-81 7084 bp Feature: gene Location: 817353-818543 bp Feature: domain Description: PRK13962 Location: 817356-818538 bp Feature: domain Description: PRK1 3962 Location: 81 7356-81 8538 bp Feature: gene Location: 818566-819426 bp Feature: domain Description: tpiA Location: 818671-819418 bp Feature: domain Description: tpiA Location: 81 8671 -81 941 8 bp Feature: gene Location: 1161321-1161611 bp Feature: domain Description: Ycf19 Location: 1161333-1161600 bp Feature: domain Description: Ycf1 9 Location: 1 1 61 333-1 1 61 600 bp Feature: gene Location: 1161902-1162111 bp Feature: gene Location: 1162163-1163458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1162388-1163003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 62388-1 1 63003 bp Feature: domain Description: GIIM Note: maturase Location: 1163063-1163297 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 63063-1 1 63297 bp Feature: gene Location: 1163563-1164219 bp Feature: domain Description: YlmH Location: 1163605-1164211 bp Feature: domain Description: YlmH Location: 1 1 63605-1 1 6421 1 bp Feature: gene Location: 1164392-1165009 bp Feature: domain Description: DivIVA Location: 1164395-1165004 bp Feature: domain Description: DivIVA Location: 1 1 64395-1 1 65004 bp Feature: gene Location: 1260333-1260602 bp Feature: domain Description: rpsO Location: 1260336-1260600 bp Feature: domain Description: rpsO Location: 1 260336-1 260600 bp Feature: gene Location: 1260895-1261104 bp Feature: gene Location: 1261156-1262451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1261381-1261996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 261 381 -1 261 996 bp Feature: domain Description: GIIM Note: maturase Location: 1262056-1262290 bp Feature: domain Description: GIIM Note: maturase Location: 1 262056-1 262290 bp Feature: gene Location: 1262841-1264937 bp Feature: domain Description: Pnp Location: 1262853-1264932 bp Feature: domain Description: Pnp Location: 1 262853-1 264932 bp Feature: gene Location: 1265122-1266846 bp Feature: domain Description: RnjA Location: 1265188-1266835 bp Feature: domain Description: RnjA Location: 1 2651 88-1 266835 bp Feature: gene Location: 1295690-1297363 bp Feature: domain Description: GlpA Location: 1295714-1297331 bp Feature: domain Description: GlpA Location: 1 29571 4-1 297331 bp Feature: gene Location: 1297655-1297864 bp Feature: gene Location: 1297916-1299211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1298141-1298756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2981 41 -1 298756 bp Feature: domain Description: GIIM Note: maturase Location: 1298816-1299050 bp Feature: domain Description: GIIM Note: maturase Location: 1 29881 6-1 299050 bp Feature: gene Location: 1299378-1300295 bp Feature: domain Description: PldB Location: 1299387-1300287 bp Feature: domain Description: PldB Location: 1 299387-1 300287 bp Feature: gene Location: 1300301-1301248 bp Feature: domain Description: MiaA Location: 1300328-1301234 bp Feature: domain Description: MiaA Location: 1 300328-1 301 234 bp Feature: gene Location: 1325107-1325316 bp Feature: gene Location: 1325368-1325667 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1325425-1325614 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 325425-1 32561 4 bp Feature: gene Location: 1325648-1326664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1325651-1326209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 325651 -1 326209 bp Feature: domain Description: GIIM Note: maturase Location: 1326269-1326503 bp Feature: domain Description: GIIM Note: maturase Location: 1 326269-1 326503 bp Feature: gene Location: 1326741-1328123 bp Feature: domain Description: PRK09034 Location: 1326744-1328088 bp Feature: domain Description: PRK09034 Location: 1 326744-1 328088 bp Feature: gene Location: 1328314-1329594 bp Feature: domain Description: PRK06349 Location: 1328317-1329361 bp Feature: domain Description: PRK06349 Location: 1 32831 7-1 329361 bp Feature: gene Location: 1782594-1783451 bp Feature: domain Description: PRK05654 Location: 1782609-1783443 bp Feature: domain Description: PRK05654 Location: 1 782609-1 783443 bp Feature: gene Location: 1783646-1784875 bp Feature: domain Description: PRK07232 Location: 1783652-1784858 bp Feature: domain Description: PRK07232 Location: 1 783652-1 784858 bp Feature: gene Location: 1785327-1786622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1785552-1786167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 785552-1 7861 67 bp Feature: domain Description: GIIM Note: maturase Location: 1786227-1786461 bp Feature: domain Description: GIIM Note: maturase Location: 1 786227-1 786461 bp Feature: gene Location: 1786674-1786883 bp Feature: gene Location: 1787194-1790391 bp Feature: domain Description: DnaE Location: 1787203-1790365 bp Feature: domain Description: DnaE Location: 1 787203-1 790365 bp Feature: gene Location: 1796399-1797565 bp Feature: domain Description: Ald Location: 1796450-1797560 bp Feature: domain Description: Ald Location: 1 796450-1 797560 bp Feature: gene Location: 1797658-1798158 bp Feature: domain Description: UspA Location: 1797667-1798093 bp Feature: domain Description: UspA Location: 1 797667-1 798093 bp Feature: gene Location: 1798414-1799709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1798639-1799254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 798639-1 799254 bp Feature: domain Description: GIIM Note: maturase Location: 1799314-1799548 bp Feature: domain Description: GIIM Note: maturase Location: 1 79931 4-1 799548 bp Feature: gene Location: 1799761-1799970 bp Feature: gene Location: 1800273-1801475 bp Feature: domain Description: PRK00180 Location: 1800285-1801458 bp Feature: domain Description: PRK001 80 Location: 1 800285-1 801 458 bp Feature: gene Location: 1883351-1883986 bp Feature: domain Description: YdiL Location: 1883408-1883975 bp Feature: domain Description: YdiL Location: 1 883408-1 883975 bp Feature: gene Location: 1884153-1884773 bp Feature: domain Description: YdiL Location: 1884216-1884762 bp Feature: domain Description: YdiL Location: 1 88421 6-1 884762 bp Feature: gene Location: 1885298-1886593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1885523-1886138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 885523-1 8861 38 bp Feature: domain Description: GIIM Note: maturase Location: 1886198-1886432 bp Feature: domain Description: GIIM Note: maturase Location: 1 8861 98-1 886432 bp Feature: gene Location: 1886645-1886854 bp Feature: gene Location: 1887145-1887858 bp Feature: domain Description: transald_staph Location: 1887148-1887856 bp Feature: domain Description: transald_staph Location: 1 8871 48-1 887856 bp Feature: gene Location: 1967007-1968392 bp Feature: domain Description: FumC Location: 1967013-1968387 bp Feature: domain Description: FumC Location: 1 96701 3-1 968387 bp Feature: gene Location: 1968588-1969010 bp Feature: gene Location: 1969759-1970805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1969762-1970350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 969762-1 970350 bp Feature: domain Description: GIIM Note: maturase Location: 1970410-1970644 bp Feature: domain Description: GIIM Note: maturase Location: 1 97041 0-1 970644 bp Feature: gene Location: 1970756-1971055 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1970813-1971002 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 97081 3-1 971 002 bp Feature: gene Location: 1971107-1971316 bp Feature: gene Location: 2313788-2314156 bp Feature: gene Location: 2314285-2315304 bp Feature: domain Description: GT4_GtfA-like Location: 2314351-2315275 bp Feature: domain Description: GT4_GtfA-like Location: 231 4351 -231 5275 bp Feature: gene Location: 2315499-2316794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2315724-2316339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 5724-231 6339 bp Feature: domain Description: GIIM Note: maturase Location: 2316399-2316633 bp Feature: domain Description: GIIM Note: maturase Location: 231 6399-231 6633 bp Feature: gene Location: 2316846-2317055 bp Feature: gene Location: 2317406-2318221 bp Feature: domain Description: HAD_SPP Location: 2317421-2318198 bp Feature: domain Description: HAD_SPP Location: 231 7421 -231 81 98 bp Feature: gene Location: 2389246-2390646 bp Feature: domain Description: antiport_nhaC Location: 2389258-2390623 bp Feature: domain Description: antiport_nhaC Location: 2389258-2390623 bp Feature: gene Location: 2390741-2391823 bp Feature: domain Description: PRK06753 Location: 2390744-2390867 bp Feature: domain Description: PRK06753 Location: 2390744-2390867 bp Feature: domain Description: Octopine_DH Location: 2391302-2391740 bp Feature: domain Description: Octopine_DH Location: 2391 302-2391 740 bp Feature: gene Location: 2391956-2393251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2392181-2392796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23921 81 -2392796 bp Feature: domain Description: GIIM Note: maturase Location: 2392856-2393090 bp Feature: domain Description: GIIM Note: maturase Location: 2392856-2393090 bp Feature: gene Location: 2393303-2393512 bp Feature: gene Location: 2393940-2394362 bp Feature: domain Description: Tic20 Location: 2393943-2394360 bp Feature: domain Description: Tic20 Location: 2393943-2394360 bp Feature: gene Location: 2466699-2467100 bp Feature: domain Description: Acetyltransf_10 Location: 2466810-2467071 bp Feature: domain Description: Acetyltransf_1 0 Location: 246681 0-2467071 bp Feature: gene Location: 2467136-2468239 bp Feature: domain Description: TrxB Location: 2467208-2468159 bp Feature: domain Description: TrxB Location: 2467208-24681 59 bp Feature: gene Location: 2468401-2469696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2468626-2469241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2468626-2469241 bp Feature: domain Description: GIIM Note: maturase Location: 2469301-2469535 bp Feature: domain Description: GIIM Note: maturase Location: 2469301 -2469535 bp Feature: gene Location: 2469748-2469957 bp Feature: gene Location: 2470271-2470702 bp Feature: domain Description: DUF2871 Location: 2470274-2470661 bp Feature: domain Description: DUF2871 Location: 2470274-2470661 bp Feature: gene Location: 2778331-2779155 bp Feature: domain Description: secY Location: 2778337-2779120 bp Feature: domain Description: secY Location: 2778337-27791 20 bp Feature: gene Location: 2779284-2786459 bp Feature: domain Description: KxYKxGKxW Location: 2779332-2779386 bp Feature: domain Description: KxYKxGKxW Location: 2779332-2779386 bp Feature: domain Description: Bact_lectin Location: 2780067-2780748 bp Feature: domain Description: Bact_lectin Location: 2780067-2780748 bp Feature: domain Description: MSCRAMM_SdrC Location: 2781384-2782083 bp Feature: domain Description: MSCRAMM_SdrC Location: 2781 384-2782083 bp Feature: domain Description: MSCRAMM_SdrC Location: 2782509-2783076 bp Feature: domain Description: MSCRAMM_SdrC Location: 2782509-2783076 bp Feature: domain Description: MSCRAMM_SdrC Location: 2783523-2784084 bp Feature: domain Description: MSCRAMM_SdrC Location: 2783523-2784084 bp Feature: domain Description: MSCRAMM_SdrC Location: 2785170-2785749 bp Feature: domain Description: MSCRAMM_SdrC Location: 27851 70-2785749 bp Feature: domain Description: Gram_pos_anchor Location: 2786313-2786430 bp Feature: domain Description: Gram_pos_anchor Location: 278631 3-2786430 bp Feature: gene Location: 2787018-2788313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2787243-2787858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2787243-2787858 bp Feature: domain Description: GIIM Note: maturase Location: 2787918-2788152 bp Feature: domain Description: GIIM Note: maturase Location: 278791 8-27881 52 bp Feature: gene Location: 2788365-2788574 bp Feature: gene Location: 2788875-2789567 bp Feature: domain Description: RutF Location: 2788890-2789481 bp Feature: domain Description: RutF Location: 2788890-2789481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC2_membrane_3 (pfam12698), RVT-GII, GIIM (pfam08388), COG3942 (Surface antigen ), GOGAT_sm_gam (TIGR01317), PTS-IIBC-Tre (TIGR01992), trehalose_treC (TIGR02403), YkvI (COG3949), Aes (COG0657), GapA (COG0057)
PRK13962 (bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional), tpiA (PRK00042), Ycf19 (COG0762), YlmH (COG2302), DivIVA (pfam05103), rpsO (PRK05626), Pnp (COG1185), RnjA (COG0595), GlpA (COG0578), PldB (COG2267)
MiaA (COG0324), group_II_RT_mat (TIGR04416), PRK09034 (aspartate kinase; Reviewed), PRK06349 (homoserine dehydrogenase; Provisional), PRK05654 (acetyl-CoA carboxylase carboxyltransferase subunit beta), PRK07232 (bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed), DnaE (COG0587), Ald (COG0686), UspA (COG0589), PRK00180 (acetate kinase A/propionate kinase 2; Reviewed)
YdiL (COG1266), transald_staph (TIGR02134), FumC (COG0114), GT4_GtfA-like (cd04949), HAD_SPP (cd02605), antiport_nhaC (TIGR00931), PRK06753 (hypothetical protein; Provisional), Octopine_DH (pfam02317), Tic20 (COG3296), Acetyltransf_10 (pfam13673)
TrxB (COG0492), DUF2871 (pfam11070), secY (PRK12907), KxYKxGKxW (TIGR03715), Bact_lectin (pfam18483), MSCRAMM_SdrC (NF000535), Gram_pos_anchor (pfam00746), RutF (TIGR03615)