myRT

myRT report for GCA_900457985.1_40757_C01

Download annotations/find similar RTs

Seq: UHAO01000001.1 Staphylococcus aureus strain NCTC5657 genome assembly, contig: ERS806209SCcontig000001, whole genome shotgun sequence (2797471 bp)
Overview 1 RT 1: 281472-287327 bp 2 RT 2: 343778-347492 bp 3 RT 3: 466435-473660 bp 4 RT 4: 684931-689817 bp 5 RT 5: 816802-821885 bp 6 RT 6: 1079524-1084503 bp 7 RT 7: 1295045-1299752 bp 8 RT 8: 1323649-1328767 bp 9 RT 9: 1343071-1347110 bp 10 RT 10: 1402039-1407248 bp 11 RT 11: 1416872-1421036 bp 12 RT 12: 1799272-1804331 bp 13 RT 13: 1886289-1890569 bp 14 RT 14: 2076290-2081515 bp 15 RT 15: 2348626-2353740 bp 16 RT 16: 2367476-2372729 bp Neighborhood of RT #1 [281472, 287329] ABC2_membrane_3 RVT-GII GIIM COG3942 Neighborhood of RT #2 [343778, 347492] SsuE RVT-GII RVT-GII GIIM YeiH Neighborhood of RT #3 [466435, 473731] GOGAT_sm_gam RVT-GII GIIM PTS-IIBC-Tre trehalose_treC Neighborhood of RT #4 [684931, 689817] YkvI RVT-GII GIIM Aes Neighborhood of RT #5 [816802, 821893] GapA RVT-GII GIIM PRK13962 tpiA Neighborhood of RT #6 [1079524, 1084532] SuhB RVT-GII GIIM DUF5325 TypA Neighborhood of RT #7 [1295045, 1299766] GlpA RVT-GII GIIM PldB MiaA Neighborhood of RT #8 [1323649, 1329000] RVT-GII GIIM PRK09034 PRK06349 Neighborhood of RT #9 [1343071, 1347118] PRK01844 RVT-GII GIIM CcdC SbcD Neighborhood of RT #10 [1402039, 1407280] PstC ptsS_2 RVT-GII GIIM CvfB Neighborhood of RT #11 [1416872, 1421041] lysA RVT-GII GIIM CspC Neighborhood of RT #12 [1799272, 1804348] Ald UspA RVT-GII GIIM PRK00180 Neighborhood of RT #13 [1886289, 1890571] YdiL YdiL RVT-GII GIIM transald_staph Neighborhood of RT #14 [2076290, 2081520] groES YdiL RVT-GII GIIM FMR2 Neighborhood of RT #15 [2348626, 2353742] antiport_nhaC PRK06753 Octopine_DH RVT-GII GIIM Tic20 Neighborhood of RT #16 [2367476, 2372755] RpiR RVT-GII GIIM PRK10746 Feature: gene Location: 281472-282638 bp Feature: domain Description: ABC2_membrane_3 Location: 281523-282606 bp Feature: domain Description: ABC2_membrane_3 Location: 281 523-282606 bp Feature: gene Location: 282936-283145 bp Feature: gene Location: 283197-284492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283422-284037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283422-284037 bp Feature: domain Description: GIIM Note: maturase Location: 284097-284331 bp Feature: domain Description: GIIM Note: maturase Location: 284097-284331 bp Feature: gene Location: 284575-286098 bp Feature: gene Location: 286427-287329 bp Feature: domain Description: COG3942 Location: 286817-287327 bp Feature: domain Description: COG3942 Location: 28681 7-287327 bp Feature: gene Location: 343778-344344 bp Feature: domain Description: SsuE Location: 343781-344312 bp Feature: domain Description: SsuE Location: 343781 -34431 2 bp Feature: gene Location: 344640-344849 bp Feature: gene Location: 344901-345599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345126-345594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3451 26-345594 bp Feature: gene Location: 345643-346197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345646-345742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345646-345742 bp Feature: domain Description: GIIM Note: maturase Location: 345802-346036 bp Feature: domain Description: GIIM Note: maturase Location: 345802-346036 bp Feature: gene Location: 346274-347269 bp Feature: domain Description: YeiH Location: 346286-347261 bp Feature: domain Description: YeiH Location: 346286-347261 bp Feature: gene Location: 347334-347492 bp Feature: gene Location: 466435-467898 bp Feature: domain Description: GOGAT_sm_gam Location: 466450-467884 bp Feature: domain Description: GOGAT_sm_gam Location: 466450-467884 bp Feature: gene Location: 468568-468777 bp Feature: gene Location: 468829-470124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469054-469669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469054-469669 bp Feature: domain Description: GIIM Note: maturase Location: 469729-469963 bp Feature: domain Description: GIIM Note: maturase Location: 469729-469963 bp Feature: gene Location: 470600-472027 bp Feature: domain Description: PTS-IIBC-Tre Location: 470618-471989 bp Feature: domain Description: PTS-IIBC-Tre Location: 47061 8-471 989 bp Feature: gene Location: 472091-473731 bp Feature: domain Description: trehalose_treC Location: 472112-473660 bp Feature: domain Description: trehalose_treC Location: 4721 1 2-473660 bp Feature: gene Location: 684931-685998 bp Feature: domain Description: YkvI Location: 684946-685993 bp Feature: domain Description: YkvI Location: 684946-685993 bp Feature: gene Location: 686334-686543 bp Feature: gene Location: 686595-687890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686820-687435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686820-687435 bp Feature: domain Description: GIIM Note: maturase Location: 687495-687729 bp Feature: domain Description: GIIM Note: maturase Location: 687495-687729 bp Feature: gene Location: 688018-689061 bp Feature: domain Description: Aes Location: 688066-688972 bp Feature: domain Description: Aes Location: 688066-688972 bp Feature: gene Location: 689389-689817 bp Feature: gene Location: 816802-817812 bp Feature: domain Description: GapA Location: 816811-817801 bp Feature: domain Description: GapA Location: 81 681 1 -81 7801 bp Feature: gene Location: 818156-818365 bp Feature: gene Location: 818417-819712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 818642-819257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 8642-81 9257 bp Feature: domain Description: GIIM Note: maturase Location: 819317-819551 bp Feature: domain Description: GIIM Note: maturase Location: 81 931 7-81 9551 bp Feature: gene Location: 819820-821010 bp Feature: domain Description: PRK13962 Location: 819823-821005 bp Feature: domain Description: PRK1 3962 Location: 81 9823-821 005 bp Feature: gene Location: 821033-821893 bp Feature: domain Description: tpiA Location: 821138-821885 bp Feature: domain Description: tpiA Location: 821 1 38-821 885 bp Feature: gene Location: 1079524-1080369 bp Feature: domain Description: SuhB Location: 1079572-1080301 bp Feature: domain Description: SuhB Location: 1 079572-1 080301 bp Feature: gene Location: 1080662-1080871 bp Feature: gene Location: 1080923-1082218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1081148-1081763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 081 1 48-1 081 763 bp Feature: domain Description: GIIM Note: maturase Location: 1081823-1082057 bp Feature: domain Description: GIIM Note: maturase Location: 1 081 823-1 082057 bp Feature: gene Location: 1082392-1082583 bp Feature: domain Description: DUF5325 Location: 1082404-1082581 bp Feature: domain Description: DUF5325 Location: 1 082404-1 082581 bp Feature: gene Location: 1082649-1084532 bp Feature: domain Description: TypA Location: 1082700-1084503 bp Feature: domain Description: TypA Location: 1 082700-1 084503 bp Feature: gene Location: 1295045-1295881 bp Feature: domain Description: GlpA Location: 1295048-1295849 bp Feature: domain Description: GlpA Location: 1 295048-1 295849 bp Feature: gene Location: 1296173-1296382 bp Feature: gene Location: 1296434-1297729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1296659-1297274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 296659-1 297274 bp Feature: domain Description: GIIM Note: maturase Location: 1297334-1297568 bp Feature: domain Description: GIIM Note: maturase Location: 1 297334-1 297568 bp Feature: gene Location: 1297896-1298813 bp Feature: domain Description: PldB Location: 1297905-1298805 bp Feature: domain Description: PldB Location: 1 297905-1 298805 bp Feature: gene Location: 1298819-1299766 bp Feature: domain Description: MiaA Location: 1298846-1299752 bp Feature: domain Description: MiaA Location: 1 298846-1 299752 bp Feature: gene Location: 1323649-1324224 bp Feature: gene Location: 1324514-1324723 bp Feature: gene Location: 1324775-1326070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1325000-1325615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 325000-1 32561 5 bp Feature: domain Description: GIIM Note: maturase Location: 1325675-1325909 bp Feature: domain Description: GIIM Note: maturase Location: 1 325675-1 325909 bp Feature: gene Location: 1326147-1327529 bp Feature: domain Description: PRK09034 Location: 1326150-1327494 bp Feature: domain Description: PRK09034 Location: 1 3261 50-1 327494 bp Feature: gene Location: 1327720-1329000 bp Feature: domain Description: PRK06349 Location: 1327723-1328767 bp Feature: domain Description: PRK06349 Location: 1 327723-1 328767 bp Feature: gene Location: 1343071-1343358 bp Feature: domain Description: PRK01844 Location: 1343119-1343326 bp Feature: domain Description: PRK01 844 Location: 1 3431 1 9-1 343326 bp Feature: gene Location: 1343648-1343857 bp Feature: gene Location: 1343909-1345204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1344134-1344749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3441 34-1 344749 bp Feature: domain Description: GIIM Note: maturase Location: 1344809-1345043 bp Feature: domain Description: GIIM Note: maturase Location: 1 344809-1 345043 bp Feature: gene Location: 1345406-1345873 bp Feature: domain Description: CcdC Location: 1345409-1345868 bp Feature: domain Description: CcdC Location: 1 345409-1 345868 bp Feature: gene Location: 1345976-1347118 bp Feature: domain Description: SbcD Location: 1346000-1347110 bp Feature: domain Description: SbcD Location: 1 346000-1 3471 1 0 bp Feature: gene Location: 1402039-1402965 bp Feature: domain Description: PstC Location: 1402075-1402960 bp Feature: domain Description: PstC Location: 1 402075-1 402960 bp Feature: gene Location: 1403156-1404139 bp Feature: domain Description: ptsS_2 Location: 1403159-1404026 bp Feature: domain Description: ptsS_2 Location: 1 4031 59-1 404026 bp Feature: gene Location: 1404430-1405725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1404655-1405270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 404655-1 405270 bp Feature: domain Description: GIIM Note: maturase Location: 1405330-1405564 bp Feature: domain Description: GIIM Note: maturase Location: 1 405330-1 405564 bp Feature: gene Location: 1405777-1405986 bp Feature: gene Location: 1406378-1407280 bp Feature: domain Description: CvfB Location: 1406393-1407248 bp Feature: domain Description: CvfB Location: 1 406393-1 407248 bp Feature: gene Location: 1416872-1418137 bp Feature: domain Description: lysA Location: 1416887-1418126 bp Feature: domain Description: lysA Location: 1 41 6887-1 41 81 26 bp Feature: gene Location: 1418374-1418754 bp Feature: gene Location: 1418987-1420282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1419212-1419827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 921 2-1 41 9827 bp Feature: domain Description: GIIM Note: maturase Location: 1419887-1420121 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 9887-1 4201 21 bp Feature: gene Location: 1420334-1420543 bp Feature: gene Location: 1420841-1421041 bp Feature: domain Description: CspC Location: 1420844-1421036 bp Feature: domain Description: CspC Location: 1 420844-1 421 036 bp Feature: gene Location: 1799272-1800438 bp Feature: domain Description: Ald Location: 1799323-1800433 bp Feature: domain Description: Ald Location: 1 799323-1 800433 bp Feature: gene Location: 1800531-1801031 bp Feature: domain Description: UspA Location: 1800540-1800966 bp Feature: domain Description: UspA Location: 1 800540-1 800966 bp Feature: gene Location: 1801287-1802582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801512-1802127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 801 51 2-1 8021 27 bp Feature: domain Description: GIIM Note: maturase Location: 1802187-1802421 bp Feature: domain Description: GIIM Note: maturase Location: 1 8021 87-1 802421 bp Feature: gene Location: 1802634-1802843 bp Feature: gene Location: 1803146-1804348 bp Feature: domain Description: PRK00180 Location: 1803158-1804331 bp Feature: domain Description: PRK001 80 Location: 1 8031 58-1 804331 bp Feature: gene Location: 1886289-1886699 bp Feature: domain Description: YdiL Location: 1886298-1886688 bp Feature: domain Description: YdiL Location: 1 886298-1 886688 bp Feature: gene Location: 1886866-1887486 bp Feature: domain Description: YdiL Location: 1886929-1887475 bp Feature: domain Description: YdiL Location: 1 886929-1 887475 bp Feature: gene Location: 1888011-1889306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1888236-1888851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 888236-1 888851 bp Feature: domain Description: GIIM Note: maturase Location: 1888911-1889145 bp Feature: domain Description: GIIM Note: maturase Location: 1 88891 1 -1 8891 45 bp Feature: gene Location: 1889358-1889567 bp Feature: gene Location: 1889858-1890571 bp Feature: domain Description: transald_staph Location: 1889861-1890569 bp Feature: domain Description: transald_staph Location: 1 889861 -1 890569 bp Feature: gene Location: 2076290-2076574 bp Feature: domain Description: groES Location: 2076293-2076572 bp Feature: domain Description: groES Location: 2076293-2076572 bp Feature: gene Location: 2076749-2077492 bp Feature: domain Description: YdiL Location: 2076755-2077418 bp Feature: domain Description: YdiL Location: 2076755-207741 8 bp Feature: gene Location: 2077569-2078864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2077794-2078409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2077794-2078409 bp Feature: domain Description: GIIM Note: maturase Location: 2078469-2078703 bp Feature: domain Description: GIIM Note: maturase Location: 2078469-2078703 bp Feature: gene Location: 2079420-2080697 bp Feature: gene Location: 2080894-2081520 bp Feature: domain Description: FMR2 Location: 2080921-2081515 bp Feature: domain Description: FMR2 Location: 2080921 -2081 51 5 bp Feature: gene Location: 2348626-2350026 bp Feature: domain Description: antiport_nhaC Location: 2348638-2350003 bp Feature: domain Description: antiport_nhaC Location: 2348638-2350003 bp Feature: gene Location: 2350121-2351203 bp Feature: domain Description: PRK06753 Location: 2350124-2350247 bp Feature: domain Description: PRK06753 Location: 23501 24-2350247 bp Feature: domain Description: Octopine_DH Location: 2350682-2351120 bp Feature: domain Description: Octopine_DH Location: 2350682-2351 1 20 bp Feature: gene Location: 2351336-2352631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2351561-2352176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2351 561 -23521 76 bp Feature: domain Description: GIIM Note: maturase Location: 2352236-2352470 bp Feature: domain Description: GIIM Note: maturase Location: 2352236-2352470 bp Feature: gene Location: 2352683-2352892 bp Feature: gene Location: 2353320-2353742 bp Feature: domain Description: Tic20 Location: 2353323-2353740 bp Feature: domain Description: Tic20 Location: 2353323-2353740 bp Feature: gene Location: 2367476-2367805 bp Feature: gene Location: 2368250-2369122 bp Feature: domain Description: RpiR Location: 2368256-2369090 bp Feature: domain Description: RpiR Location: 2368256-2369090 bp Feature: gene Location: 2369327-2370622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2369552-2370167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2369552-23701 67 bp Feature: domain Description: GIIM Note: maturase Location: 2370227-2370461 bp Feature: domain Description: GIIM Note: maturase Location: 2370227-2370461 bp Feature: gene Location: 2370674-2370883 bp Feature: gene Location: 2371376-2372755 bp Feature: domain Description: PRK10746 Location: 2371385-2372729 bp Feature: domain Description: PRK1 0746 Location: 2371 385-2372729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC2_membrane_3 (pfam12698), RVT-GII, GIIM (pfam08388), COG3942 (Surface antigen ), SsuE (COG0431), YeiH (COG2855), GOGAT_sm_gam (TIGR01317), PTS-IIBC-Tre (TIGR01992), trehalose_treC (TIGR02403), YkvI (COG3949)
Aes (COG0657), GapA (COG0057), PRK13962 (bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional), tpiA (PRK00042), SuhB (COG0483), DUF5325 (pfam17259), TypA (COG1217), GlpA (COG0578), PldB (COG2267), MiaA (COG0324)
PRK09034 (aspartate kinase; Reviewed), PRK06349 (homoserine dehydrogenase; Provisional), PRK01844 (YneF family protein), CcdC (COG4846), SbcD (COG0420), PstC (COG0573), ptsS_2 (TIGR02136), CvfB (COG2996), lysA (TIGR01048), CspC (COG1278)
Ald (COG0686), UspA (COG0589), PRK00180 (acetate kinase A/propionate kinase 2; Reviewed), YdiL (COG1266), transald_staph (TIGR02134), groES (PRK14533), FMR2 (COG3560), antiport_nhaC (TIGR00931), PRK06753 (hypothetical protein; Provisional), Octopine_DH (pfam02317)
Tic20 (COG3296), RpiR (COG1737), PRK10746 (putative transport protein YifK; Provisional)